Panicum virgatum (switchgrass): 120650651
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Entry
120650651 CDS
T07260
Name
(RefSeq) vacuolar-sorting protein BRO1-like
KO
K12200
programmed cell death 6-interacting protein
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03250
Viral life cycle - HIV-1
pvir03272
Virion - Hepatitis viruses
pvir04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120650651
03272 Virion - Hepatitis viruses
120650651
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120650651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120650651
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120650651
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
120650651
Exosome [BR:
pvir04147
]
Exosomal proteins
Proteins found in most exosomes
120650651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
PAXX
iSirtuin
Motif
Other DBs
NCBI-GeneID:
120650651
NCBI-ProteinID:
XP_039783786
LinkDB
All DBs
Position
9K:20050488..20056785
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AA seq
866 aa
AA seq
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MASAAGSSNVMLAIHEKKTTPTDLYRPLRLYVASAYSEREAAAADDDLSAVRDLRAEVEQ
PSLPDPSSLEQRRDALLAYARALALVEPRFPISPDRAHVHSLTFTWHDAFKGNKKCALGS
IHLEKAAVLFNLGAVDSQIALAADRSTDVGIRTACGAFQSAAGAFAWLRESGVAAKAVAA
GATTVDITPECAGMLEKLMLAQAQECFFEKVIAGGKPPALCSKVARQVGIFYEEAYAALS
APPLSQHFDRTWVSHVQLKAAQFYADACYRYSLDLHEKEEIAEEIARLKIGMSALADAKK
AAKGVAAQLMDSVNKLESNMKINLERAMKENDRVYLMRVPAAGSLGALPAASLVKPTSLA
EVLDASKERLFSSLVPDGSMKALSKYTEMVDNIIRIQAEKLQQASEITRVRLKEMDLPDS
ILSLEGSITLPVDLKEDVEAVQISGGPAGLESELQQLRDLRRVNQELLVQTEELLQKEAN
EDAQFRTQFGSRWTRPQSSTLTKNIQDRLNLFAANLKKAADSDSLIERGVKENYPLMSIL
DKRPIESALPSISRPIMSLDGNEDAIVGALKQSLRQLESLGAQRAGLEDMLKEMKRKDDI
LPKLMAGVGSHDDLFKKEISKYDSICAEIADNIVAQEQLLLQIQAQNEQFATVFNLEDYK
AARERCYKQIAAAVAKYREIKKNINEGLNFYVTLQEAIGKIKQQCSDFIMTRNIQCREMI
EDVQRKLAGFNFSSSSHSSMQRNASVLPDQSSPPPPHAQAPYAAAPGVDSRPGYSQPEPR
PAYSQPYPPSYGAPPQQPPYGAPAPGQYQQPPHQPPPGHDYGQPAYPGWRGPYYNAHQQQ
PGPYSQPPYNAPGAYPPHQSNYYRPQ
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggcggcggggtcctccaacgtgatgctcgcgatccacgagaagaagacgacc
cccaccgacctctaccgcccgctccgcctctacgtcgcctccgcctactcggagcgcgag
gccgcggcggccgacgacgacctcagcgcggtgcgcgacctccgcgccgaggtcgagcag
ccctccctcccggacccgtcctccctcgagcagcgccgggacgcgctcctcgcctacgcc
cgggcgctcgcgctcgtggagccccgcttccccatctcccccgaccgcgcccacgtccac
tccctcaccttcacctggcacgacgccttcaaggggaacaagaagtgcgccctcggctcc
atccacctcgagaaggccgccgtgctcttcaacctcggcgccgtcgactcccagatcgcg
ctcgccgcggaccgctccaccgatgtcgggatccggaccgcgtgcggcgcgttccagagc
gcggcgggggcattcgcctggctcagggagagcggggtcgcggccaaggccgtcgccgcg
ggggctaccaccgtcgacatcacgcctgagtgtgcgggcatgctggagaagctcatgctc
gcgcaggcgcaggagtgcttcttcgagaaggttatcgctggagggaagccgcccgcgctg
tgctccaaggtggcgcggcaggtgggcatattctacgaagaagcatatgcagctctcagt
gcacctcctctaagtcagcacttcgataggacatgggtgtctcatgtccagctgaaggca
gctcaattctatgctgatgcttgttatagatattcacttgatcttcatgagaaagaagaa
attgccgaggaaattgcacgattaaagatcggaatgagtgccttggcagatgctaagaag
gctgcaaagggagttgctgcccagcttatggattctgtcaacaagctggaaagtaacatg
aaaatcaacttggaaagggctatgaaggagaatgatcgtgtttacctgatgcgggttcca
gctgctggttccttgggtgccctccctgcggcatcccttgtaaagcctacctctctggct
gaagttttagatgccagcaaggaaaggcttttttcatcgcttgtgcctgatggcagcatg
aaagcactttccaaatacacagagatggtagataatattatccggatccaggcagagaaa
ttgcagcaagctagtgagatcactagagtccggttgaaggaaatggatttaccagattct
attctttcactggaaggaagtataacattgcccgtagatctgaaggaagacgtagaggct
gtgcagataagtggtgggcctgctggcttggagtccgagttgcagcagcttagggatctg
aggagagtcaatcaggaactacttgttcagactgaagagcttctgcagaaggaggcgaat
gaagacgcacaatttcgtacccaatttgggagtcgttggactagacctcaatcaagcacc
ctaactaaaaacattcaggatcgactgaatctatttgctgctaatcttaagaaagctgct
gatagtgactctttgatcgaacgaggcgtgaaggagaattaccccttgatgtctattctt
gacaaacgaccgatagagtctgcacttccaagtatttctaggcctatcatgtccttggat
gggaatgaagatgccattgttggagccctgaaacaaagcttgagacaactggaatctctt
ggagcacaaagggcaggtcttgaagacatgctaaaagaaatgaaaagaaaggatgatata
ctgcctaagttgatggctggtgttggatcacatgacgaccttttcaagaaggagatttct
aagtatgattctatctgtgctgagattgctgataacattgtggcacaggaacaattattg
ctgcaaatacaggcgcaaaatgagcaattcgctactgtattcaatctagaggattacaaa
gctgctcgtgagagatgttacaagcaaattgctgctgctgttgcgaaataccgggagatt
aagaagaacatcaatgagggcctaaacttttatgtgactttacaggaagcaataggcaaa
ataaaacagcagtgcagtgactttataatgacccgaaacattcaatgccgcgaaatgatt
gaagatgtgcagaggaagctagcgggtttcaacttctcgtcctccagccactcgtctatg
cagaggaatgcttctgtactgcctgatcagagcagtccaccaccgccccatgctcaggcc
ccctatgctgctgcacctggggtcgactctaggcctggatactctcaaccggagccaaga
cctgcatactcacagccataccccccgtcctatggtgctccaccgcaacagcccccatat
ggtgcgccagcccctggtcagtaccagcagccaccgcaccagccgcctcctggtcacgac
tacggtcagccggcatatcctggatggcgtgggccgtactacaacgcccatcaacagcaa
ccggggccatattctcagccaccttacaatgccccaggggcttaccctccccaccagagc
aactactataggcctcaatga
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