KEGG   Panicum virgatum (switchgrass): 120650687
Entry
120650687         CDS       T07260                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03030  DNA replication
pvir03410  Base excision repair
pvir03420  Nucleotide excision repair
pvir03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120650687
   03410 Base excision repair
    120650687
   03420 Nucleotide excision repair
    120650687
   03430 Mismatch repair
    120650687
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pvir03032]
    120650687
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120650687
Enzymes [BR:pvir01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     120650687
    6.5.1.6  DNA ligase (ATP or NAD+)
     120650687
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     120650687
DNA replication proteins [BR:pvir03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    120650687
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     120650687
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     120650687
   NER (nucleotide excision repair)
    Other NER factors
     120650687
   MMR (mismatch excision repair)
    Other MMR factors
     120650687
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HVO_A0114 Presenilin
Other DBs
NCBI-GeneID: 120650687
NCBI-ProteinID: XP_039783831
LinkDB
Position
9K:20657113..20664634
AA seq 902 aa
MFLRLRATSTSTTSPLLLRCRPPPSPKTLALAPPTHLLPFFLRPRLFAAASSSSASAASP
RHSAAAAAAAAKSAEKKPPAATAKRAGAVPAPAAAAASGMSAPGGGAGGKRTVADVLMGN
ARAAAGKAKKAAPSPRKSPAQPGGAGAEPEAAAVAEKPPHSPARSKRASSPAKSPQSLAD
GAAGEKKRSTSPAKSKGPAAASQLDGAKEDSPSPKRSKTLAAKSDTASPTKAKGQVASQA
EEKKQPSNLAKTKDSPKSEEKNTTLELKKKGSEFDPMAAAYWKPGEPVPFLFLARALDLI
SNESGRIVITEILSNVFRTVMATTPDDLLATVYLSANRIAPPHEGIELGIGDASVIRALA
EAYGRKEEHVKKDLKELGDLGLVAKASRSSQKMMFKPKPLTISRVLSTFRTIAKESGKDS
QDKKRNHMKGLLVAATDCEPQYITRLLQSKMRIGLAEKTVQMALGQAAVYSDKKSSPPKV
QSPFEEAAKIIKQVYSVLPIYDKIVPALLEVGVWKLPETCKFSIGVPVGPMLAKATKSVS
EIIDKFQGLEYTCEYKYDGERAQIHCMEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPT
VKSFVLDCEIVAYDREKQKILPFQILSTRARKGVTINDIKVSVCTFGFDILYINGQPLLQ
EQLKIRREHLYNSFEEVPGVFQLATAITSNDLEEIQKFLDTAVNSSCEGLIIKTLDKDAT
YEPAKRSNNWLKLKKDYMDSIGDSLDLVPIAAFYGRGKRTGVFGSFLLACYDEQNEEYQT
ICNIGTGFSEQQLEERSSSLRTKVIEKPKAYYRFADTMDPDVWFEPSEVWEVKAADLSIS
PVHRAANGIVDPNKGISLRFPRLLRLRDDKSPEQATTSEQVADMYRAQKINHGYNQEDED
DD
NT seq 2709 nt   +upstreamnt  +downstreamnt
atgttcctccgactccgagccacctccacctccaccacctccccgctcctcctccgatgc
cgcccgcccccctcgcctaaaaccctagccctcgccccgcctacgcatctcctccccttc
ttcctccgcccccgcctcttcgccgccgcctcctcctcctccgcgtccgccgcctctccc
cgccacagcgcggccgcggccgccgccgcggccaaatccgcggagaagaagccgccggcc
gcgacggcgaagcgggccggcgcggtgcctgcaccagctgcggcggcggcgtcgggaatg
tcggcccccgggggcggcgccggggggaagcgcacggtggcggacgtgctgatggggaac
gcgcgggccgccgccggcaaggcgaagaaggcggcgccgtccccgaggaagtccccggcg
cagcccggcggcgcgggggccgagccggaggccgcggcggtggcggagaagccaccgcac
tcgccggcgaggtcaaagcgggcgtcgtcccctgcgaagtccccccaatcgctggctgat
ggggcggctggcgagaagaagaggtcgacgtcgccggcgaagtccaagggtccagccgcg
gcctcgcaattggatggagcgaaggaggattccccgtcgccgaagaggtccaaaacccta
gcggccaaatcggacactgcgtcgccaaccaaggctaaaggccaagttgcttcccaagcg
gaggagaagaagcagccatccaatttagccaaaaccaaagattccccaaagtccgaagag
aagaataccaccctagagctgaagaagaaaggcagtgagtttgacccgatggctgctgcc
tattggaagcccggtgagcctgtgccgttcctgtttctggctcgggcgcttgatctcatc
tccaatgagagtggccggattgtcattactgaaatcctatcaaatgtgttccggacggtg
atggcaacgacaccggatgacctccttgcaactgtatacctctcagccaatcggattgca
ccacctcatgaggggattgagcttggaattggggatgcatcagtcatccgtgcacttgca
gaagcatatggacgcaaggaggagcatgttaagaaggatcttaaggaattgggtgatttg
gggcttgtggcgaaagcaagcaggtcatcgcagaagatgatgtttaagccaaaaccactg
acaatatctcgggtgctcagcacttttcggacaattgcaaaggagtcaggcaaagacagt
caagataaaaaaagaaaccatatgaagggacttcttgttgctgctactgactgtgaacct
caatacatcacacgtcttcttcagtcaaagatgaggatcgggctggcagagaaaactgtc
caaatggctcttgggcaagctgccgtatattctgacaaaaaatcttcgccgccaaaagtt
cagtcgccttttgaagaggctgcaaaaataattaaacaagtatattcagttcttccaatc
tacgataaaattgtcccagcattacttgaagttggagtttggaagcttccagagacatgc
aaattttccataggtgtccctgttggccctatgttagcaaaagcaacgaaatctgtctcg
gagatcattgacaagtttcagggtcttgagtatacttgtgagtacaagtatgatggtgaa
agggctcagatacattgcatggaggatggttcagtagagatttatagtcggaatgctgaa
agaaacaccggaaagtatccagatgttgttgatgcggtttctagattccggaagcctaca
gtcaaatcatttgtcttggactgtgaaattgttgcctatgatcgtgaaaaacagaaaatt
ttgcctttccagatacttagcacaagggcccgcaagggtgttaccataaatgacatcaaa
gtttcagtctgtacttttggctttgatattctttacataaatggacaacctcttctccag
gaacaacttaaaattcgtcgagagcatctttacaactcttttgaggaagtaccaggtgtt
tttcaattggcaactgcaattacatcaaatgacctggaggagatacagaaatttcttgac
acagctgtcaactccagttgtgaagggttgattatcaagacattggataaagacgcaaca
tatgagccagcgaagcgatcaaacaattggttgaaactgaagaaggactacatggatagc
attggagactctttggacttagtaccgattgctgccttttatgggagaggaaaacgaaca
ggtgtctttggatcattcctcctggcatgctatgatgagcagaacgaagagtaccaaaca
atatgcaacataggtactggattttctgagcaacagcttgaagaacgttcttcgagcctt
cgaactaaagtgatagaaaaaccaaaggcatactacagatttgctgacacaatggaccct
gatgtgtggtttgaaccgtcagaggtgtgggaggtgaaagctgcagatctgagcataagt
cctgtgcatcgtgctgctaatggtatagtcgatccaaataagggtatctccctgagattt
cctcgtctgttgcgattacgggacgataaaagcccagaacaggcgaccacttctgagcaa
gttgctgacatgtaccgtgctcaaaaaatcaaccacggttataaccaggaggatgaggat
gatgactga

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