Panicum virgatum (switchgrass): 120650706
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Entry
120650706 CDS
T07260
Name
(RefSeq) endoribonuclease Dicer homolog 3b-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120650706
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120650706
microRNA pathway
RISC loading complex
120650706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
PAZ
dsrm
SWI2_SNF2
DND1_DSRM
AAA_22
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
120650706
NCBI-ProteinID:
XP_039783861
LinkDB
All DBs
Position
9K:complement(21024340..21041304)
Genome browser
AA seq
1640 aa
AA seq
DB search
MVSAAMSEDDADRPPPPPPAQLPPPRRPHKQLQPRGYQVEVFAAALRGNTIAVLDTGSGK
TMVAVMLAREHARRARAGDAPRRIVVFLAPTVHLVHQQFEVIREYTDLDAVECHGASGVG
EWSALQWKEAIGTKEIVVMTPQILLDALRHAFLTMNVMSLLIFDECHRACGNHPYSQIMK
EFYADSEWRPAVFGMTASPVATKGASTIEDCEAQVVQLELILDAKVYIVEDRNELESFSP
SATIVNKYYDPYLFDLDDLESKLQILYEKFDGLLVSLQESSPNKFEDTDSILEMSRKSLY
RYHGKILYGLNTLGPIVTLEVVKIYNESISTVGDSEDCHFSKASLNLQVSYFKEGLFLIE
EILPHGYEELMKLESGSVELTKRGYISSKVDTLINIFKSFGSSEEVICLIFVERIMTAKA
VERFMRGIVNFSRFSISYLTGGSTSKDALSPAVQRFTLDLFRAGKVNMLFTTDVTEEGID
IPNCSCVIRFDLPRTVCSYVQSRGRARRSSSSYVLMIERGNLVQQEHIFRIIRTEYYVKN
FALHKSPNTPSHDLPLKEKYTYHVDSTGATITAGCCVNLIYKYCEKLPKDRYYMPKPSFD
VALKDGSYQCILTMPPNAAFRSIVGPPSNTCNLAKQLVSLEACKKLHQLGELNDHLLPTE
EPTNIDTAVTDGKCLSGPGTTKRKELHGTINVHGLSGNWIHESETVTLNTYRFDFVCDQE
GEIYAGFVLLMESSLDDDVANSKIDLFLIPNKMVYTTVTPCGKIQLNKEQLRKGKLFQEF
FFNGIFGRLFHGSRTSGLQREFIFRKGYEIQWSSDNMYLLLPLRHTSHIQCDLNIQWEAV
ASCSDAVEHLRNLYLEDGNLNHENLSPNKRDKGEEIIHLANRSLHFSSVKDSVVLSLHTG
RIYSVLDLILDTTAEDSFDEMYNGKASPFASFMDYYHQKYGIVIQHPGQPLLLLKQSHNA
HNLLFSKLKYLDGSTGNPLLLEKEQIHARVPPELLIHIDVTTDILKSFYLLPSVMHRLQS
LMLASQLRSDIGYTLHIPSSLILEAITTLRCCETFSLERLELLGDSVLKYVIGCDLFLRY
PMKQEGHLSDMRSTAVCNATLHKHGIWRSLQGYVRDSAFDPRRWVAPGQISLRPSPCTCG
VETAFVPFCGRYISDDPSFVVGKPCDRGHRWMCSKTVSDCVEALVAAYYVGGGITAALWV
MQWFGIDIRCDMNQVQKLKSNASHLCYLSKLKDIEELETKLKYNFSVKSLLLEAITHPSL
QELGVDYCYQRLEFLGDSVLDLLITRHLYASHNDVDPGELTDLRSALVSNESFAQAVVRN
NIHNHLQHGSGILLEQITEYVRFNLECNGNENEFFQQATCKVPKVLGDIMESITGAIFID
VNFNIDMVWKIVEPLLSPMITPDKLALPPYRELLELCSHLGCFINSKCTSKGEELIIEMT
VQLRDELLIAQGHDRNRKSANAKAAARILVDLKKRGLSLRQCLSKAKQLDTVSSELQSQL
TSLETRHGYPDVDGRLSLDGLSSVGATVFLPLKMDKGGPRTALFKLCKILQWPIPKFKFV
ERRFRTPIILDGVTTTNFNSFVSTITLHIPDVTVITLQGDQRTNKKSSQDSASLVMLEKL
QELKVCICKMQQQSGMDHIS
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atggtgtccgccgccatgtccgaggacgacgccgaccggccgcccccacctccgccggcg
cagttaccgcctcctcgccgcccgcacaagcagctccagccgcgggggtaccaggtggag
gtgttcgcggcggcgctgcgcgggaacaccatcgcggtgctcgacaccggctccgggaag
accatggtcgccgtcatgctggcgcgtgagcacgcccgccgcgcgcgcgccggggacgcc
ccgcgccggatcgtggtgttcctcgcgcccaccgtgcacctcgtccaccagcaattcgag
gtgattcgggagtacacggacctcgacgcggtggagtgccatggggcatcaggggtcggt
gagtggagcgctcttcagtggaaggaggcaatcgggactaaggagattgttgttatgacg
ccacagatattgttggacgctctgaggcatgcttttctaacaatgaatgtaatgagcttg
ctaatatttgatgaatgtcatcgtgcttgtggaaaccatccctactcacaaataatgaag
gagttttacgctgattctgagtggaggccagcagtatttggaatgacggcatctcctgtt
gccacaaaaggggcttctaccatagaagattgtgaagcacaggttgttcaacttgaactg
atattggatgccaaggtatatattgttgaagataggaatgaactggagagcttttcacct
agtgcaacaattgttaacaaatactatgatccttacttgtttgatttggatgatctggaa
tcgaagttacagatattgtatgagaagtttgatggtttgttggttagtctacaagaatca
tcccctaataaatttgaagacactgatagtatcttggagatgtcaagaaagagcttgtac
aggtaccatgggaagatattgtatggactaaatactcttggtcccattgttacattggag
gtggtgaaaatatataatgaaagcatcagtacagttggtgattctgaggattgccacttt
tctaaagctagcctgaacttacaggtgtcctattttaaagaaggtttatttttgatagag
gaaattctgccacatggttatgaggaactgatgaaattagaatctggttccgtggaacta
actaagaggggatatatttcttctaaagtggatacactgatcaacattttcaaatcattt
ggctcatcagaggaagtcatttgcctgatttttgttgaaagaattatgacagccaaagct
gttgaaaggtttatgagaggaattgtgaacttctctcgtttttcaatttcttacttaact
ggagggagtacatcaaaagatgctttgagcccagcagtacagagatttactttggatttg
ttccgagctgggaaggtgaatatgcttttcacaacagatgttactgaagagggtatcgac
atacctaactgttcttgtgtgatacgctttgaccttcccagaactgtttgtagctatgtc
cagtctcgtgggcgtgccagaagaagcagttcgagttatgttcttatgattgagagggga
aacttggtgcagcaggaacatatatttcgtataataagaactgaatactatgttaaaaac
tttgcacttcataaatcgcccaatactccatcgcatgatttgcctctcaaagagaagtac
acatatcatgttgactcaacaggagcgactatcactgcaggctgctgtgtcaatctaatt
tataaatattgtgagaagctacctaaagacaggtattacatgccaaagccttcatttgat
gtggctctcaaagatgggtcttatcaatgtatcttgacaatgcctcccaatgctgcattt
cgaagtatagttggacctccaagcaatacatgtaatttagctaagcagcttgtatccctt
gaggcatgcaagaaattgcaccagctgggagaactcaatgatcatctattacccactgaa
gaacctactaatattgatacagctgtaacagatggaaaatgtctttctggaccaggaaca
actaaacgaaaggagcttcacggaacaataaatgttcacggtctatctggaaattggatc
catgaaagtgaaactgtcactctgaatacttacagatttgattttgtttgtgatcaagaa
ggtgaaatctatgctgggttcgttctcttaatggaatcatcacttgatgatgatgtggca
aattcaaaaatagatctcttccttatacctaataagatggtctacacaactgtaactcct
tgtggaaaaattcaactgaacaaagagcagctgcgtaaaggaaaattatttcaagaattc
ttcttcaatggtatatttggtagattatttcatggttcccgaacgagtggactacaaagg
gaatttattttcagaaaaggctatgaaatacaatggagctcagacaacatgtacttactt
ttgcctttgaggcatacctcacatatacagtgtgatctaaacatacagtgggaagctgtt
gcatcttgctctgatgcagtggaacatttgagaaatttgtatctggaagatgggaatctt
aatcatgaaaatttaagtccaaataaaagagacaagggagaagaaataattcatctggcg
aacagatctcttcatttttccagtgtcaaagattcagttgtgctatctcttcatactggg
aggatttattctgttctcgacttgattttagacacaactgcagaagattcattcgatgag
atgtataatgggaaagcttcgccatttgcttcattcatggactactaccatcaaaagtat
ggtattgttattcaacacccagggcaacctttgttgctgttaaagcaaagccacaatgca
cacaatctacttttctcaaaattgaagtacctagatggttcaactggcaatcctctgctc
ttggagaaagagcaaattcatgcccgagtcccacctgaactactcatccacattgatgtc
acaactgatattcttaaatcattttatttactcccttctgtaatgcatcggcttcagtct
ttaatgctagcgagccagcttcgcagtgacattggttacactctacacatacctagtagt
ctgatattggaggctatcacaactttaaggtgctgcgagacattttctcttgagcggctg
gagttattaggagactcagtgctgaaatatgtaataggatgtgacttgttcctaaggtat
ccaatgaaacaggaaggtcatctctctgatatgagatccacagccgtatgcaatgcaaca
ttgcataaacatggaatatggagatccttgcagggttatgtacgtgatagtgcattcgac
ccacgtcgttgggttgcccctggacagatatcattgcgtccttctccttgtacctgcgga
gttgagactgcatttgtgcctttttgtggaagatatatcagtgacgatccatcgtttgtc
gtgggaaaaccatgtgacagaggtcacaggtggatgtgctcgaaaacagtatctgattgt
gttgaggcgctagttgcagcatattatgttggtggtggcatcactgctgcactttgggtt
atgcagtggtttggtattgatatcagatgtgatatgaatcaagtgcagaaactgaaatct
aatgcatctcatctgtgctatttatcaaaattgaaagatattgaggaactggaaacaaaa
ctaaagtacaacttttcggtcaagagccttctgcttgaagccataacacatccatctctg
caggaattaggggtcgactattgttaccagcggctggaatttcttggtgattctgtgctg
gacctactaatcacacgacatctctatgcttcccacaatgatgttgatcctggagaatta
acagacttacgttctgctttggttagtaatgagagttttgcacaagcagttgtcagaaac
aacattcataatcatctacagcatggatctggaatacttttggagcaaataacagagtat
gtcaggttcaatttggagtgcaacgggaacgagaatgaattctttcaacaagctacatgc
aaagtacccaaggttcttggagacatcatggaaagtattactggtgcaatatttatagat
gtaaattttaatattgatatggtttggaagattgttgaaccgttgctgtctccaatgatt
acccctgataagcttgcattgccaccttatcgtgagttgctggagttatgtagccacctt
ggttgcttcattaattcaaaatgtaccagtaaaggagaagaattaattatcgagatgacg
gtgcagttacgagatgaactgctgatagcacaagggcatgacagaaataggaagagtgca
aatgcaaaggcagcagcccgaattctggttgacctgaagaaaaggggtctttcacttaga
caatgtttatctaaggctaagcaattggatactgtctcttcagaactgcaatctcaattg
acaagtctggaaacacgacatggttatcctgatgtggatggccgtcttagcctagatggt
ctttcctcagtgggagcaacagtttttcttcctctcaaaatggataaaggtggacctcgg
actgcactttttaagttatgcaagattttgcagtggccaataccgaaatttaaatttgtg
gaacgaaggtttaggactcctattattctggatggggttacaactacaaacttcaatagc
tttgtttccaccatcaccttgcacatacctgatgtgacagtcattacgcttcaaggtgat
caacgaactaacaaaaagagttctcaggattcagcatcgttggtaatgcttgagaaactc
caagaactcaaggtctgcatatgcaagatgcagcagcaaagcggcatggatcacatcagt
taa
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