Panicum virgatum (switchgrass): 120650784
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Entry
120650784 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120650784
KO
K19022
AP-5 complex subunit beta-1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120650784
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AP-5 complex
120650784
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP5B1_middle
AP5B1_C
Motif
Other DBs
NCBI-GeneID:
120650784
NCBI-ProteinID:
XP_039783987
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All DBs
Position
1K:56442846..56446700
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AA seq
1097 aa
AA seq
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MDPRQLSPQEWEQLLDDFSSSSSSSSSSPSRRHRWLHLPLLDLAVSSLPRRDLPSHLKPL
LLSLIDDHLLPPSPRSLPLLLTSFLSFPPDHPLRDHLLVTVVSAFASALAAPLSKDHHAP
PLAALVDALLAAASRPNHAPDRALACDALRALDAALPGLLAQALGHLYALAAAERSPAAQ
SYLLLLASAARHAVRLGSLAATTSILAVAGPPTPFSVPAHLLSPPAASISMPPPSEVNVR
DIRKVLALLMDRPQVLTPAAATEMTAILAEIASAVLKWAPAIAAHIKVHFGGMLYSSNPM
LLHSLLTLFLQFPDAFGAEDERTMARRLALVAREAHRPLAARLLALHWLLGSTMFRNLVP
GLARWFYPNLFDPLALKAKKLDCLAYVAAQLDGRKVAGGTASEQATGLLDDGLVCVSAFR
WLPAWSIETVVAFRALHRVLIIAAPHSTEDTRCSGAGELLNSTIFHHLQAILVDMASEHR
GLVPVIAEFTNRLLACNSHQWAGEQLLRTLDERLLPRLEPGYQLASYYPLFEEIAQNEMV
PQLRLIELLTKQMVSLTKKHGPDTELKSWSQGSKVVGICRVMLKHHHSSHIFLPLSHLLV
LTIESFPDLEVRDHARICLRMLSCIPGKKLRHLMGVGEQPSGVTPSHPGSLFDIPSPGPA
QDLTSMTNLVSYIHLERIVPLVVKQSWALTLPNFSVHRRPSGHILSIQDVSSSPSEQEKP
TGPTIERIEYTQETLRVMDSKGAETLKILRRYFACIPDYLHSSGLKIRIPCTFRFDSEPF
NHAWRSDSPVSGSDEADELPALYAVMITFSSSAQFGKIPSCHVPFILGEPPGSGMDIVPI
NNQNREESSYCASVVIELEPREPSPGLIDISIAANTENCQVLSGSLKPVTVGIEDMFMMA
SVPPDTPKEDVAVYYQDLFHALWEACDSSSNTGRETFPLSGGKGSAAINGTRSVKLMEVT
PKVLIGAVERYLASFVVSVAGDSLVTILRGNGIIKNIVWEESVSDASVGVDALVPYSPDS
NLQLQLIDDDNIGIGSERYGHESKRDMGVMRFMIFLPPRYHLLFLMEVGCASTLVRIRTD
HWPCLAYVDEYLEALIS
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggacccccgccagctctcgccgcaggagtgggagcagctcctcgacgacttctcctcc
tcctcctcctcctcctcctcctctccctcccgccgccaccgatggctccacctcccgctc
ctcgacctcgccgtctcctcgctcccccgccgcgacctcccctcccacctcaagcccctc
ctcctctccctcatcgacgaccacctgctcccgccctccccccgcagcctccccctcctc
ctcacctccttcctctccttccctcccgaccaccctctccgcgaccacctcctcgtcacc
gtcgtctccgccttcgcctccgccctcgccgcgcccctctccaaggaccaccacgcgccg
cccctcgccgctctcgtcgacgcgctgctcgccgccgccagccgccccaaccacgccccc
gaccgcgcgctcgcctgcgacgccctccgcgccctcgacgccgcgctcccgggcctcctc
gcccaagccctcggccacctctacgcgctcgccgccgccgagcgctccccggccgcccag
tcctacctcctcctgctcgcctccgccgcgcgccatgccgtacgcctcgggagcctcgcc
gccaccacctccatcctggccgtcgccggtccgcccacccccttctccgtgcccgcccac
ctgctctcgccccccgccgcctctatctctatgcctccgccctcggaggtcaacgtccgg
gacataaggaaggtgctcgctctcctcatggacaggccgcaggtgctcacgcccgcagcc
gccacggagatgacagccatccttgccgagatcgcatcggctgtgctcaagtgggcgcca
gccatcgcagcgcacatcaaggtgcacttcggggggatgctctactcctccaaccccatg
ctgctgcactccctgctcacgctcttcctccagttcccggatgcatttggggccgaggat
gagcgcacaatggcacgccgcctagctttggttgctcgtgaggcgcaccgcccactcgca
gcacgcttgctggctttgcactggctactcggctctaccatgttcaggaatcttgtgcct
gggcttgcccgatggttttaccctaacttattcgatccccttgcgctcaaggccaagaag
ctggattgtctcgcttatgttgctgctcaacttgatggccgtaaggttgcaggaggcaca
gctagtgagcaagcgaccgggctccttgatgatggcttggtttgtgtctccgccttcagg
tggctccctgcatggagtattgaaacggttgtggcgttccgagcacttcacagggtcttg
attattgctgctcctcacagcaccgaggacacgcgctgctccggggctggtgagctcctg
aattctactatcttccaccatttacaggctatcttggttgatatggcatcagagcatcgg
ggtttagtcccagtgattgctgagttcaccaaccgtttgctagcatgcaactcacatcag
tgggctggggagcagttgctccggacacttgatgagcgcctacttccaaggcttgagcca
ggctaccagcttgcatcatactaccctctttttgaggagattgcgcagaatgagatggtg
cctcagctccgcctgatagaattgctaaccaaacagatggtttctctcaccaagaagcat
ggcccagacacagaactgaagtcgtggtctcagggaagcaaggttgtgggcatttgccgt
gtcatgctgaagcatcaccacagctctcatatcttccttcccctttcgcatcttcttgtg
ctcactattgagtccttccctgatctggaggtccgggaccatgcaaggatttgcttgcgg
atgttgtcttgtattcctgggaagaaactgaggcatctcatgggagttggcgagcaacct
tctggggtcactccttctcatccgggttccttgttcgacatcccatcaccaggccctgct
caagatcttacgagcatgaccaatctagtgtcttacattcaccttgaaaggattgtgcct
ctagttgtaaagcaatcgtgggccctcacattgcctaatttcagtgtccacaggagacca
tctggtcacattcttagtatacaggacgtgagctctagtccctcagagcaagaaaagcca
acaggaccgacaatcgagagaattgaatatacacaagaaacacttcgtgtgatggattct
aaaggtgcggaaacattgaaaattctcagaaggtactttgcatgcattcctgactacctg
cactcatctggtctcaagataagaataccctgcacgtttagatttgactcggagccattt
aaccatgcgtggaggtcagattcgccagtttcaggttctgatgaggctgatgagttgcca
gccctttatgcagtgatgatcacattttcgtcaagtgcacagtttggaaaaatcccctca
tgccatgtacctttcattctaggggaacctccaggttctggtatggacattgtccccatt
aataatcagaacagggaagaatccagttactgtgcctcagtggtgatagaactggaacct
cgagagccttcacctggccttattgatatctcaattgcagcaaatacagagaactgccaa
gtcttatcagggtccctcaaaccagttacggttggcattgaggacatgtttatgatggcc
agtgtaccacctgatactccgaaagaggatgtggctgtgtactaccaggatctgtttcat
gctttatgggaggcctgcgacagttcttctaacacaggtcgagagactttccctttgagt
ggagggaaaggatcagcagccattaacggaactcggtctgttaagcttatggaggtaact
ccaaaggttttgattggagctgttgaaagatatctcgcttcctttgttgtcagtgttgct
ggagattcacttgtaaccattctgagaggaaatggaatcattaagaacatcgtgtgggaa
gaaagtgtctcagatgccagtgtaggtgttgatgcactggttccatactcaccagacagc
aatctccagcttcagctcatagatgacgacaatattgggattggctctgagaggtatggc
catgaaagcaagagggatatgggagtcatgaggttcatgatattcctaccacccaggtat
cacctcctcttcttgatggaagttggatgtgcctccacattggtcaggataaggactgat
cattggccttgccttgcatatgtggacgaatacctggaagcgttgatttcttaa
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