Panicum virgatum (switchgrass): 120650792
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Entry
120650792 CDS
T07260
Name
(RefSeq) probable serine/threonine protein phosphatase 2A regulatory subunit B''delta
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
pvir04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120650792
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120650792
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120650792
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120650792
03036 Chromosome and associated proteins [BR:
pvir03036
]
120650792
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
120650792
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120650792
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120650792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_5
DUF4187
P2R3B_EF-hand
DUF5539
Motif
Other DBs
NCBI-GeneID:
120650792
NCBI-ProteinID:
XP_039783998
LinkDB
All DBs
Position
9K:complement(22335581..22344294)
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AA seq
541 aa
AA seq
DB search
MEVEPARRDAAALDPELLQLPELAPGALRENSIIADALYSQWLVLPETAKLVKSLIEDAK
AGTTLNVAGTSASTNAASSSSLPSMFPAGSAPPLSPRSTSGSPRVMRRGSGAGPSSLGSP
LKLVSEPVREVIPQFYFKNGRPPPKDLKEQCLSRIDHLFFGGEGLQIQEFRSVTKDICKL
PSFFSSVLFKKIDVACTGTVSRDAFVEYWINDNKITMDMASQIFEILRKPGYNSLTQDDF
KPVLKELLATHPGLEFLQGTPEFQERYAETVIYRIFYSINRSGNGHLTLRELKRGNLIAA
LQQLDEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHSLTYRIVDR
IFTQIPRKFTSMTEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGILTSNEMQF
FYEEQLHRMECMAQEPVLFDDILCQMIDMIGPENESYFTLRDLKRCKLSGNIFNILFNLN
KFMAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDGEDASNGSGDVWDESLEAP
F
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggagccggcgaggagggacgcggcggcgctcgacccggagctgctgcagcta
ccggagctcgcgccgggcgcgctccgtgagaattccatcatagctgatgcgctctactcg
cagtggctcgtgctacctgagacagccaaactggtaaagtctttgattgaggatgcaaaa
gctggtactacgcttaatgttgctggaacctctgctagtacaaatgctgcttcaagtagt
tctctaccgtcgatgtttcctgctggtagtgctcctccactttctcctaggagcacttct
ggttctccccgtgttatgagacgaggatctggtgctggaccatcgtccttgggttctcca
ttgaaattagttagtgaaccagtgagagaagttatacctcagttttacttcaagaatggg
cgtcctcctccaaaagacttgaaggagcagtgcttatctagaatagatcacttatttttt
ggtggggaggggcttcagattcaagaatttagatcggtgacaaaggacatatgcaagctt
ccttcattcttctctagtgttcttttcaagaaaattgatgttgcgtgcactggaaccgtc
tcaagggatgcatttgttgagtattggatcaatgacaataagattacgatggatatggca
agccaaatatttgaaatattaagaaagccgggttacaactctctcactcaggatgacttc
aagcctgtccttaaagaactcctggcaactcaccctggcttagagttcttacaagggacc
ccggagtttcaggagagatatgcggaaactgtaatatacagaatcttttactccataaat
agatctggaaatggccatcttacgctgagagagctcaaacgtggaaatttaattgctgcg
cttcagcaattagatgaggaagaagatatcaacaaagtgttgagatacttctcatatgag
cacttctatgtgatttactgcaaattttgggagctggatacagatcacgatttcttgatt
gataaggaaaaccttatcagatatggaaatcattcattgacctatagaatagttgataga
atttttacacagataccaaggaaattcacaagcatgacagaaggaaagatgggttatgaa
gacttcgtttacttcatattatcagaggaagacaaatcatctgagcctagccttgaatac
tggtttaagtgcattgatcttgatggtaatggtattttaacttccaatgaaatgcaattt
ttctatgaggagcaattgcaccgtatggagtgcatggcgcaggaacctgtgcttttcgat
gacatattatgccagatgattgatatgattggaccagagaacgagagctattttacacta
cgggacttaaaacggtgtaaactctcaggaaatatattcaatattcttttcaatctaaac
aagttcatggcatttgaaactcgtgatccattcctcattcgccaggaacgtgaaaaccca
accctaactgagtgggatcgattcgcgcatagagagtatattaggttgtccatggaagaa
gatggtgaagatgcttcaaatggaagtggtgatgtgtgggatgaatcacttgaggctcca
ttctga
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