Panicum virgatum (switchgrass): 120650870
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Entry
120650870 CDS
T07260
Name
(RefSeq) protein CHROMATIN REMODELING 20-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120650870
03036 Chromosome and associated proteins [BR:
pvir03036
]
120650870
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
120650870
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120650870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ADD_ATRX
Motif
Other DBs
NCBI-GeneID:
120650870
NCBI-ProteinID:
XP_039784096
LinkDB
All DBs
Position
9K:complement(23690220..23709455)
Genome browser
AA seq
1482 aa
AA seq
DB search
MNKDGILSDDELKKMESVQPNGQHGDVDIIIIDSQNDENKAGAKTNIRDDLFKEHKEPVC
RTVDNNVNDEETSITDDDSEADSYEFFLRESDNEQASASEVDTEVPLTEEEVEELVYEFL
EVESKAAEAQESLEKESMDKIETEVRLELSERLQGDELESAVSTEMEQFQMQWENELDDL
ETRSSILLEQLDAAGVELPKLYKSIESQVPDVCETEAWKRRAHWAGSQVPEEANLSIKKA
DEYLQSCRPARRKHGRLLEEGASGFLAGKVPVEDGDSIEKSWSSFNELIKSRENVENTFG
RSNWASVYLASTPKEAAALGLQFPGVDEVEEIAEVDGVFDNIKGVDEVELSEEQRRKYRK
VKEEDDAKIMNCLQRRSKGKRVRGTKENLGKVSSCHEKPPPSENVILGVESDLPSSKKLK
IDENKVSIETLKRTCEDNDELFQKRSETVIIESDDEMQIDSKPALQNDRECGSARVEKVV
DIIDLDLFPSQSPKLSDKSFPKAFKCTICTEMLNASDVHRHPVLDVTVCGPCRFLVIEKN
RLEDPVSGGYCTWCAQSELLQSCSSCKLLFCTNCLLKNLGEECSSEAKATGWQCCCCMPS
QLEILISECDKALSGVESSDSETSDPELSGPENNGPVSKRRMKKRIRRIMDDTELGEETK
RKIAMEKARQDHLKSMQEQSASKLRNANTSFRVPLEVSLEDAGDGHIVNLAREEDEEPVR
IPSSMSSKLKPHQVEGIRFMWENIIQSVKKVKSGDKGLGCILAHNMGLGKTFQVITFLYT
VMKCAQLGLRTALIVTPVNVLHNWRKEFSRWRPAELKPLHVFMLEDVARVKRPDLLTKWR
VKGGVLLIGYSSFRNLSLGKHVKDKNIANEITYALQCGPDILVCDEAHMIKNRRADITLA
LKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTS
DDVKIMNKRSHILFEQLKGFVQRMSMNVVKNDLPPKKVFVITVKLSQLQRKLYRRFLDVH
GFSSSGYSEKSHSSFFAKYQTLAQVWNHPGLLQMAKEQRGNLRREDAVENFMMDESSSDD
NTETYLPNGEKQKDRADQQSKKSNFMNEESNWWEDLLDENTYMEADYSGKMILLLDILSK
SSELGDKVLVFSQSLTTLDLVEFYLSKLQIKGKEGKHWKRGKDWYRLDGSTPSSDRQNLV
EMFNDPENARVKCTLISTRAGSLGINLHAANRVVLLDGSWNPTHDLQAIYRVWRYGQTKP
VYAYRLMAHRTMEEKIYKRQVTKEGLAARVVDRQQVSRTISKEEMLHLFEFGEEELMEPN
ENGSTTVIEKPSTSNTIETSEPVPVDRLMLNLLSEQTRWIAGYHEHEALLQENEEERLTK
EEQDMALLEWEALRNAVRDPERKSNMTKVLTDPNLVRPVKAASRSRQLQQPKLNSNNQKK
CNNLTHLLTLRSHGTKAGCRTTCAECGQEICWETLNRDGRSR
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atgaataaggatgggatactatcagatgacgagttgaaaaagatggaatctgttcaacca
aatggacaacatggagatgttgatataataattattgactcccaaaatgatgaaaataaa
gctggagcaaaaactaacataagagacgatctatttaaggagcataaggagcctgtttgc
agaacagtggacaataatgtgaatgatgaagaaacatccattactgatgacgattcagag
gctgactcatatgaattctttctccgcgaatcagataatgaacaagcttcagcatctgag
gtagacactgaggtacctctaactgaggaagaagttgaagaattggtttatgaatttctt
gaagttgagagcaaagcggcggaagcgcaagaatcacttgaaaaggagtcaatggacaaa
attgaaactgaagtaagattggaattatccgagaggcttcaaggagatgagttagaatca
gctgtgtcaactgagatggagcaattccagatgcaatgggaaaatgaacttgatgatctg
gagacacgtagttctattctgctggaacaacttgatgctgctggagttgaacttcccaaa
ctctataagtcaatcgaaagtcaagttccagatgtttgtgaaactgaagcatggaagagg
agggcccattgggctggatctcaagtgcctgaagaagctaacctatccattaaaaaggct
gatgaatacctccagtcttgcagacctgcaaggagaaaacacgggaggttactggaggaa
ggtgctagcggctttcttgctggaaaagttcctgttgaggatggtgattctattgagaaa
agttggagttcattcaatgaacttattaaatctagggagaatgttgaaaatacttttggt
aggagtaactgggcatcggtttatcttgcaagtacccccaaggaagctgctgcattaggt
ctccagtttcctggagttgacgaggtggaggagatagctgaagttgacggtgtttttgat
aatataaaaggtgtagatgaagtagagctttctgaggaacagagaaggaaatacagaaag
gtgaaggaagaggatgatgcaaaaataatgaattgcctgcagcgtcgttcgaaaggaaaa
agggtgagaggcactaaggagaacctcggtaaagtctcatcatgccatgagaagcctcct
ccatcagaaaatgttattttgggtgtggaaagtgaccttccttcatctaagaagcttaaa
attgatgaaaacaaagtttctattgagacattgaagcgtacatgtgaagataatgatgag
ctttttcagaagagatcggaaactgtgataatagaaagtgatgatgagatgcagatagat
agcaagccagctttacaaaatgatagggaatgtggctcagcaagagttgaaaaggtggtt
gatatcattgatcttgatctattcccatcacaaagccctaagctcagtgataaaagtttc
cctaaagctttcaaatgtactatttgcactgaaatgttgaatgcctctgacgtgcatcgc
cacccagtactggatgttactgtttgtggaccatgcagatttcttgtgatagagaagaat
cgtcttgaggatcctgtatctggtggttattgcacttggtgtgcacaaagcgaactactt
caaagttgtagttcttgtaagctgcttttctgtacaaattgtttgttaaagaatttaggt
gaagaatgctcatcagaagctaaagccactggttggcagtgttgctgctgtatgcccagt
caactggaaattttaatttctgaatgtgacaaggccctcagtggtgttgaatcttctgat
tcagagaccagcgacccagagctttctggaccggaaaacaacggtcctgttagcaagcga
agaatgaagaagaggattagaagaattatggatgatacagaacttggggaggaaactaag
cgcaaaattgcaatggagaaggcaaggcaagaccatttgaagtccatgcaagagcaatct
gccagcaaattaaggaatgcgaatacttccttcagagtcccattggaagtctctttagag
gatgctggggatgggcatatagtcaaccttgccagggaggaagatgaggaacctgttaga
attccaagcagcatgtcttctaaactgaagcctcatcaggtagaaggaataaggtttatg
tgggaaaatattattcaatctgttaaaaaggtgaagtctggggataaaggtcttggctgc
attttggcgcataatatgggcctagggaaaacctttcaggttattacattcctctacact
gttatgaaatgtgctcaattgggattgcgcacagcacttattgttacccctgttaatgtt
cttcataactggaggaaagagtttagcagatggcgtccagcagaactgaagcctcttcat
gtttttatgttggaagatgttgcgagggttaaaagaccagatttactaaccaaatggcga
gtaaaaggcggagtgcttctcatcggatattcatcgtttaggaacttatcccttggaaag
catgtgaaggacaaaaatattgcaaacgaaattacttatgctttgcagtgtggaccagac
attcttgtatgtgatgaagcacatatgataaagaatcggagggctgacattacactggct
ctgaaacaagtaaggacgcagagaagaattgcattaactggatctccattgcagaataat
ttgatggaatattattgtatggttgattttgtcagggaaggctttcttgggagtagccat
gaatttcgaaacaggttccagaaccccattgaaaatgggcaacacacgaattcaacatca
gacgatgtaaagatcatgaacaaacgatcacacattttgtttgaacaactgaaaggtttt
gtccagcggatgagcatgaatgttgtgaagaatgatctaccacctaagaaggtttttgtt
attactgtaaagctatctcagctgcagaggaagctatacagaagattcttggatgttcat
ggtttctcaagtagtggttattcagaaaaatctcacagttccttctttgccaagtaccaa
acattagcccaggtatggaatcatccagggctcctccagatggctaaagaacagagagga
aatttgcgtcgcgaggatgccgttgagaactttatgatggatgagagttcaagtgatgat
aatactgaaacatacttgcctaatggagagaagcagaaggatagagctgatcagcagtcc
aaaaaaagcaactttatgaatgaggaaagtaactggtgggaggaccttctagatgagaat
acttatatggaggcagattacagtggcaaaatgattttgctccttgatatcctgtcaaaa
agttctgaattgggtgacaaagtattggtgtttagccagagcttgaccactctggattta
gtggagttttatctgtcaaaattgcaaatcaaaggaaaagaaggcaaacattggaagcga
gggaaggattggtataggcttgatgggagcactccgtcttctgatcgacagaatcttgtg
gagatgtttaacgaccctgaaaatgcaagagtaaaatgcacgttgatatcaactcgtgct
ggatccctaggcattaaccttcatgctgcaaatcgagtggttcttctggatggatcctgg
aatccaacacatgatctgcaagccatttatcgtgtttggaggtatggccagaccaaacct
gtatatgcttaccgcctaatggcacatcgaacaatggaagagaaaatatataagcggcag
gtgacaaaagaaggcctcgcggcaagggtggtggatagacagcaagtttcaagaaccatc
tccaaagaagagatgttgcatctttttgaatttggtgaagaggaattgatggaaccgaat
gagaacggttctacaaccgtgattgagaagccatccacttccaacactattgaaacttcc
gaacctgtacctgtggacaggctaatgctgaacctactcagcgaacaaactcggtggatt
gcaggttaccatgaacatgaagctctcctccaagaaaatgaagaagaaaggcttacaaag
gaggaacaagacatggccttgttagagtgggaggctttgaggaatgcagtacgtgatccc
gagagaaaatcaaacatgactaaggttctaacagatcccaaccttgtgcggccagttaag
gctgcttcaagaagccggcagctgcagcaacctaaacttaactcaaacaaccaaaagaag
tgcaacaacttaacccacttgctgactctaagaagccatggcacgaaagcagggtgcagg
actacctgtgctgaatgtggccaggagatttgttgggagacactaaatagagatggtaga
tcgagatga
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