Panicum virgatum (switchgrass): 120650925
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Entry
120650925 CDS
T07260
Name
(RefSeq) cell division control protein 48 homolog E
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120650925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120650925
03009 Ribosome biogenesis [BR:
pvir03009
]
120650925
04131 Membrane trafficking [BR:
pvir04131
]
120650925
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120650925
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
120650925
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
120650925
Membrane trafficking [BR:
pvir04131
]
SNARE
SNARE associated proteins
Others
120650925
Autophagy
Aggrephagy
Other aggrephagy associated proteins
120650925
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120650925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_33
AAA_2
AAA_5
AAA_22
CDC48_2
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_28
Mg_chelatase
AAA_17
ATPase_2
Parvo_NS1
AAA_18
Viral_helicase1
IstB_IS21
ABC_tran
Vps4_C
AAA_lid_PRS2_C
AAA_7
NACHT
NB-ARC
DUF815
TsaE
AAA_24
ResIII
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
120650925
NCBI-ProteinID:
XP_039784162
LinkDB
All DBs
Position
9K:complement(24788758..24793242)
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AA seq
810 aa
AA seq
DB search
MASQGEPSASASDAKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPETMERLQLF
RGDTVLLKGKKRKDTICIVLADDTCEEPKVRMNKVVRQNLRVRLGDVVSVHQCQDVKYGK
RVHILPIDDTVEGITGNLFDVFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAE
YCIVAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSI
GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA
EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSI
DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLELIAKDTHGYVGADLAA
LCTEAALQCIREKMDIIDLEDETIDAEILNSMAVTNDHFKTALGTSNPSALRETVVEVPN
VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN
ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA
GGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEQSR
LQIFKACLRKSPVAKEVDLNALAKYTQGFSGADITEICQRAVKYAIRENIEKDIERERRR
KDNPEAMEEDEVDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFR
FSEQSTTAATTAAADPFASAGAADDDDLYS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccaaggggagccgtcggcctccgcttccgatgcgaaggggaagaaggactac
tcgacggcgatcctggagaggaagaagtcgccgaaccgcctggtcgttgatgaggccacc
aacgacgacaactccgtcgtcgctctgcacccggaaaccatggagaggctgcagctcttc
cgcggcgataccgtgctccttaagggtaagaagaggaaagacaccatttgcattgtcctt
gcggatgatacctgtgaggaaccaaaggttcggatgaacaaggttgtccgtcagaacctg
agggtgaggcttggtgacgtggtttctgtccaccagtgccaggatgtgaaatacgggaag
cgtgtacacattcttccaattgatgatacagttgaaggcattacagggaacctttttgac
gtcttcttgaaaccatacttcctagaagcataccgtcctgtgaggaaaggagaccttttc
cttgtcaggggtggaatgagaagtgtggagttcaaagtgatagagactgatcctgctgag
tactgcatcgttgccccagatactgaaatattttgtgatggggagcctattaagagggag
gatgaggaacgccttgacgaagttggctatgatgatgtcggaggagtcagaaagcaaatg
gcccagatcagggagcttgttgagcttcctctgcgccatccccagcttttcaaatctatt
ggtgtgaagccaccaaagggcatattgctgtatggaccacctggttccgggaagactctt
attgctcgtgcggttgcaaatgagactggagcctttttctttcttatcaatggcccagag
attatgtcaaagctagcaggtgagagtgagagcaatctcaggaaggcatttgaagaagca
gaaaagaatgctccgtctatcattttcattgatgaaattgattccattgctcccaagaga
gagaagaccaatggagaagtggagcgtcgtattgtttcacagctactgactcttatggac
ggactaaaagctcgttctcatgttattgttatgggtgctacaaaccgaccgaacagcatt
gatcctgctcttcgaagatttggaaggtttgaccgggaaattgacatcggggttcctgat
gaagttggaaggcttgaggtcctccgcatccacacgaagaacatgaaacttgctgaggat
gttaatttggagctcattgccaaggatacccatgggtatgttggtgctgatcttgctgct
ctttgcactgaggctgctcttcagtgcattcgtgagaagatggacatcatagatcttgag
gacgagactatagatgctgagatactgaactcgatggctgttacaaatgaccatttcaag
actgcacttggaacaagcaacccatccgctcttcgtgaaactgttgttgaagttcctaat
gtctcttgggaggatattggtgggctggacaacgtcaagagggagctccaggagactgtc
caatatcctgttgagcacccggagaagtttgagaagtttggcatgtctccatccaaagga
gttctgttctatggccctcctggttgtggtaagaccttgttggcaaaggcaattgccaat
gagtgccaggccaacttcatcagtgtaaagggtcctgaattgcttaccatgtggtttggt
gagagtgaagccaatgtccgtgaaatttttgacaaggctcgccaatctgctccctgtgtc
ctcttctttgatgagcttgactcaattgctactcagagaggaagcagtgtaggtgatgct
ggaggtgccgctgatagagtgctcaatcagctactgacagagatggacggcatgaatgct
aagaaaaccgttttcattattggggccacaaacaggcctgatatcatcgatccagctttg
cttaggccagggcgtcttgaccagctgatctacattccactgcctgatgagcagtctagg
ctacagatcttcaaggcctgtctaaggaagtcccctgtggccaaggaagtggacttgaat
gctcttgctaagtacacccaagggttcagtggtgcagatatcactgaaatttgccagcgt
gcagtgaaatatgccatcagagagaacattgagaaggatattgagagggaaaggcggaga
aaggacaaccctgaggcaatggaggaggatgaagtggacgacattgctgaaatcaaggca
gcccactttgaggagtcgatgaagtatgcacgccgcagtgtcagcgacgctgatatccgc
aagtaccaggcgtttgcccagacgctgcagcagtcccgtgggttcggcagcgagttccgc
ttctcagagcagtcaacaaccgccgccaccacagctgcagctgatccttttgcatccgct
ggtgcggccgatgatgacgatctatacagctag
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