KEGG   Panicum virgatum (switchgrass): 120650925
Entry
120650925         CDS       T07260                                 
Name
(RefSeq) cell division control protein 48 homolog E
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120650925
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120650925
   03009 Ribosome biogenesis [BR:pvir03009]
    120650925
   04131 Membrane trafficking [BR:pvir04131]
    120650925
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120650925
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     120650925
Ribosome biogenesis [BR:pvir03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    120650925
Membrane trafficking [BR:pvir04131]
 SNARE
  SNARE associated proteins
   Others
    120650925
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    120650925
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   120650925
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 AAA_33 AAA_2 AAA_5 AAA_22 CDC48_2 AAA_14 TIP49 NPHP3_N RNA_helicase nSTAND3 AAA_28 Mg_chelatase AAA_17 ATPase_2 Parvo_NS1 AAA_18 Viral_helicase1 IstB_IS21 ABC_tran Vps4_C AAA_lid_PRS2_C AAA_7 NACHT NB-ARC DUF815 TsaE AAA_24 ResIII Zeta_toxin Zot
Other DBs
NCBI-GeneID: 120650925
NCBI-ProteinID: XP_039784162
LinkDB
Position
9K:complement(24788758..24793242)
AA seq 810 aa
MASQGEPSASASDAKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPETMERLQLF
RGDTVLLKGKKRKDTICIVLADDTCEEPKVRMNKVVRQNLRVRLGDVVSVHQCQDVKYGK
RVHILPIDDTVEGITGNLFDVFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAE
YCIVAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSI
GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA
EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSI
DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLELIAKDTHGYVGADLAA
LCTEAALQCIREKMDIIDLEDETIDAEILNSMAVTNDHFKTALGTSNPSALRETVVEVPN
VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN
ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA
GGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEQSR
LQIFKACLRKSPVAKEVDLNALAKYTQGFSGADITEICQRAVKYAIRENIEKDIERERRR
KDNPEAMEEDEVDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFR
FSEQSTTAATTAAADPFASAGAADDDDLYS
NT seq 2433 nt   +upstreamnt  +downstreamnt
atggcgagccaaggggagccgtcggcctccgcttccgatgcgaaggggaagaaggactac
tcgacggcgatcctggagaggaagaagtcgccgaaccgcctggtcgttgatgaggccacc
aacgacgacaactccgtcgtcgctctgcacccggaaaccatggagaggctgcagctcttc
cgcggcgataccgtgctccttaagggtaagaagaggaaagacaccatttgcattgtcctt
gcggatgatacctgtgaggaaccaaaggttcggatgaacaaggttgtccgtcagaacctg
agggtgaggcttggtgacgtggtttctgtccaccagtgccaggatgtgaaatacgggaag
cgtgtacacattcttccaattgatgatacagttgaaggcattacagggaacctttttgac
gtcttcttgaaaccatacttcctagaagcataccgtcctgtgaggaaaggagaccttttc
cttgtcaggggtggaatgagaagtgtggagttcaaagtgatagagactgatcctgctgag
tactgcatcgttgccccagatactgaaatattttgtgatggggagcctattaagagggag
gatgaggaacgccttgacgaagttggctatgatgatgtcggaggagtcagaaagcaaatg
gcccagatcagggagcttgttgagcttcctctgcgccatccccagcttttcaaatctatt
ggtgtgaagccaccaaagggcatattgctgtatggaccacctggttccgggaagactctt
attgctcgtgcggttgcaaatgagactggagcctttttctttcttatcaatggcccagag
attatgtcaaagctagcaggtgagagtgagagcaatctcaggaaggcatttgaagaagca
gaaaagaatgctccgtctatcattttcattgatgaaattgattccattgctcccaagaga
gagaagaccaatggagaagtggagcgtcgtattgtttcacagctactgactcttatggac
ggactaaaagctcgttctcatgttattgttatgggtgctacaaaccgaccgaacagcatt
gatcctgctcttcgaagatttggaaggtttgaccgggaaattgacatcggggttcctgat
gaagttggaaggcttgaggtcctccgcatccacacgaagaacatgaaacttgctgaggat
gttaatttggagctcattgccaaggatacccatgggtatgttggtgctgatcttgctgct
ctttgcactgaggctgctcttcagtgcattcgtgagaagatggacatcatagatcttgag
gacgagactatagatgctgagatactgaactcgatggctgttacaaatgaccatttcaag
actgcacttggaacaagcaacccatccgctcttcgtgaaactgttgttgaagttcctaat
gtctcttgggaggatattggtgggctggacaacgtcaagagggagctccaggagactgtc
caatatcctgttgagcacccggagaagtttgagaagtttggcatgtctccatccaaagga
gttctgttctatggccctcctggttgtggtaagaccttgttggcaaaggcaattgccaat
gagtgccaggccaacttcatcagtgtaaagggtcctgaattgcttaccatgtggtttggt
gagagtgaagccaatgtccgtgaaatttttgacaaggctcgccaatctgctccctgtgtc
ctcttctttgatgagcttgactcaattgctactcagagaggaagcagtgtaggtgatgct
ggaggtgccgctgatagagtgctcaatcagctactgacagagatggacggcatgaatgct
aagaaaaccgttttcattattggggccacaaacaggcctgatatcatcgatccagctttg
cttaggccagggcgtcttgaccagctgatctacattccactgcctgatgagcagtctagg
ctacagatcttcaaggcctgtctaaggaagtcccctgtggccaaggaagtggacttgaat
gctcttgctaagtacacccaagggttcagtggtgcagatatcactgaaatttgccagcgt
gcagtgaaatatgccatcagagagaacattgagaaggatattgagagggaaaggcggaga
aaggacaaccctgaggcaatggaggaggatgaagtggacgacattgctgaaatcaaggca
gcccactttgaggagtcgatgaagtatgcacgccgcagtgtcagcgacgctgatatccgc
aagtaccaggcgtttgcccagacgctgcagcagtcccgtgggttcggcagcgagttccgc
ttctcagagcagtcaacaaccgccgccaccacagctgcagctgatccttttgcatccgct
ggtgcggccgatgatgacgatctatacagctag

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