KEGG   Panicum virgatum (switchgrass): 120651059
Entry
120651059         CDS       T07260                                 
Name
(RefSeq) transportin MOS14-like isoform X1
  KO
K15436  transportin-3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03013  Nucleocytoplasmic transport
pvir03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120651059
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    120651059
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pvir03016]
    120651059
Transfer RNA biogenesis [BR:pvir03016]
 Eukaryotic type
  tRNA transport factors
   tRNA import factors
    120651059
SSDB
Motif
Pfam: TPR_TNPO3_IPO13_4th Xpo1 TPR_TNPO3_IPO13_2nd TPR_TNPO3_IPO13_3rd IBN_N Importin_rep_3 CRM1_C DUF3927
Other DBs
NCBI-GeneID: 120651059
NCBI-ProteinID: XP_039784337
LinkDB
Position
9K:27127823..27154046
AA seq 966 aa
MEAQAMATVKEALAALYHHPDDSIRTAADRWLQEFQHTLDAWQVADSLLHDERSNLETLI
FCSQTLRSKVQRDFEELPSGAFRSLQDSLYALLKKFNKGPAKVRTQICIAIAALAVHVPV
EDWGAGGIVNWLSDEMKAHPEFIPGFLELLIVLPQEISSYKIAARPERRRQVESDLCTSA
NVAISLLTACMAIDQLKEQVLEGFSSWLRFCHGISASELASHPLVHMALSSLNSDQFLEA
AVNVTSELIHATVSYGSGTTAEQLPLIQILVPRIMGLNELLKDPSKDEEDVKAIARLYAD
MGESYVDLIAAGSDDSIQIVNALLEVTSHQEFDICSMTFNFWHRLKRNLIRRESYVSYGS
EVLIEAERNRRLLIFRPKFESLVSLVSSRVEYPEDYHTFSEEDCRDFRHVRYAVSDVLLD
ATDVLGGDSTLKVLSTKLAQAYGSCNTKQNSKWQPVEAALFCIQAIAKSVSLEEREILPQ
VMSLLPCLPHNEQLLQTVCSTVGSFSKWIDAAPAESSILPPLVDILNKGMSTSEDTAAAA
SVAFKYICEDCRRKFAGSLDGLFQIYHIAISGVGGYKVSSEDSLHLVEALSVVITTLPPE
SARTALELICQPVINPLQELIQQGDQILQQIPARQLTVHIDRLSSIFSNVKHPAVVAEAV
NRYWPILKTIFDQRAWDTRTMESVCRSCKFAVRTCGRAMGMTIGAMLEEIQTLYQQHKQS
CFLYLSSEVIKIFGSDPSCADYLTNLIQILFNHTVQLLRTIQDFTARPDIADDCYLLASR
CIRYCPNLFVPTEMFQRLVDCAMAGITIQHREACKSILSFLSDVFDLPNSSDGGNYREFI
NTIVLQRGATITRIMIAALTGALPSGRLEEVSYVLLSLSRAFGENMLNWARESINLIPPQ
ALTDAERLRFLNIISDAASGSSLHTITDRFGEISDVCRRNKTVQDLVQSALRPHDLTFTV
VPQQLS
NT seq 2901 nt   +upstreamnt  +downstreamnt
atggaggctcaggcgatggcaacggtgaaggaggcgctcgccgcgctgtaccaccaccct
gacgatagcatccgcaccgccgccgaccgctggctccaggagttccagcacacgctcgat
gcctggcaggtagctgacagtttacttcatgatgaaagaagtaatttagaaactctcatc
ttctgttctcagaccctcagaagcaaggtacaaagggactttgaagagttaccctcggga
gctttccgatcgttacaggattctttatatgctttgctgaaaaagtttaataagggacca
gcaaaagtaagaacacagatttgtattgcaattgctgctctggccgtgcatgtacctgta
gaggactggggagctggtggaattgtgaattggctaagcgatgagatgaaagctcatcca
gaatttattccaggcttccttgaactgctgatagttttgccacaggaaatttctagttat
aaaattgcagctcgtcctgaaaggcgcagacaggttgagagtgacctttgtacatctgca
aatgttgccattagtttattaactgcttgtatggctattgatcagctgaaagaacaggtt
ttggagggattttcttcttggcttcgtttctgtcacggaatctctgcttctgaacttgca
tcacatcctttggtccatatggcactctcttcattgaactctgatcaatttttggaggca
gctgtaaatgttacatctgaattgatacatgctactgtatcttatggctctggtactacc
gctgaacaattgccgctgattcaaattcttgtccctcgtattatgggtctgaatgagctg
ctcaaagatccatctaaggatgaagaagatgtaaaagctattgctcgtttatatgcagac
atgggtgaatcctatgttgacttgattgcagcaggttcagatgattccattcaaattgtg
aatgcactgctagaagttacttctcatcaggagtttgacatttgctctatgacatttaat
ttctggcaccgtcttaagcgtaacctgatcaggagggaatcttatgtatcatatggatct
gaggtgctaattgaagctgagagaaacagaagattgctaatattccgtcctaaatttgaa
agtctggtgtctctggtcagttcccgagttgaataccctgaggactaccacacattttca
gaggaggactgcagggatttcagacatgttagatacgctgttagtgatgtgttacttgat
gcaaccgatgttctcggcggtgactcaacactaaaagtactttccacgaaactagctcag
gcatatggaagctgcaacactaagcagaacagcaagtggcaacctgtagaggctgccctg
ttctgtatacaagcaattgcgaaatcagtctcacttgaagagagagaaattttaccacag
gttatgtcactgcttccctgccttcctcacaatgagcagttgctgcaaacagtttgttcg
accgttgggtcattttcaaaatggattgatgctgcaccagctgaatcatccattctccca
cctttagttgatattctcaataagggtatgagtacatcagaggatacagctgcggctgct
tctgtggcattcaagtatatatgtgaagactgtaggagaaagtttgccgggtccttggat
ggcctcttccagatataccatattgcaatcagtggagttggtggttataaagtttcttca
gaggattcattgcatttggttgaagccctaagtgtggttattacaacgcttccaccagaa
tctgctagaacagccctggagttaatctgccagccagtaatcaaccccttgcaagaatta
atccagcaaggtgatcaaattcttcaacaaatccctgctcgacagttaaccgtacatata
gaccgcttatcgagcattttcagcaatgtaaaacatccagcagtagttgctgaagctgta
aatagatattggccaatactcaaaactatctttgatcagcgagcatgggatacacgtacc
atggagtcagtatgtcgatcttgcaaatttgctgtaaggacatgtggaagggccatggga
atgacgattggtgcaatgcttgaagaaatccaaactctttaccaacaacacaagcagtct
tgcttcctttacctatccagtgaagttatcaagatatttgggtctgatccatcttgtgcg
gattatcttactaacttgatacaaatacttttcaaccatacagttcagcttctcagaaca
attcaagattttacagctagaccagatatagctgatgattgctatctgttagcgtcaaga
tgtattcgttactgtcccaatctatttgtacctacagaaatgtttcaaagattggttgac
tgtgcaatggctggtataactatacaacacagggaagcatgtaaatcaatattgtctttt
ctatctgacgtctttgaccttccaaactcatctgatggggggaattaccgagaatttatt
aacacaatcgtacttcagcgtggtgcaaccattactagaataatgattgctgccttaaca
ggagcgttgccatctggtcgtttggaagaggtatcttatgttctgctgtcacttagcaga
gcttttggtgagaacatgctgaattgggcgagggaaagcattaatcttataccaccacaa
gctctaacagatgcagaacgcttgcgtttcttgaacatcatatctgacgctgcatctggg
tctagtcttcataccataacagatagatttggagaaatttcagatgtttgtagacgaaat
aaaactgtgcaagacctggttcaaagtgccttgcggcctcatgatttgaccttcactgtg
gttccacaacagctgtcataa

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