Panicum virgatum (switchgrass): 120651067
Help
Entry
120651067 CDS
T07260
Name
(RefSeq) ribosomal RNA small subunit methyltransferase I-like
KO
K07056
16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:
2.1.1.198
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120651067
Enzymes [BR:
pvir01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.198 16S rRNA (cytidine1402-2'-O)-methyltransferase
120651067
Ribosome biogenesis [BR:
pvir03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
120651067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TP_methylase
RsmI_C
DUF3253
CSN7_HB_subdom
Motif
Other DBs
NCBI-GeneID:
120651067
NCBI-ProteinID:
XP_039784350
LinkDB
All DBs
Position
9K:27282900..27287566
Genome browser
AA seq
336 aa
AA seq
DB search
MASLLRLQAFAPALNVPRNRCFLSPLGLASAATAPLARRLSTAASTSSPEPPSSEPNLES
GLYLVATPIGNLEDITLRALRVLKCANVILSEDTRHSGKLLQHYNIKTPLLSFHKFNERE
REPSILRRLHEGEAVALISDAGTPGISDPGMELARLCAAEKISVVPIPGPSAAITALSAS
GLPSNEFTFVGFLPKHARSRRDRLEISAREAATQIFYVPPHGIHQFLVDAASSFGDSRSC
VIAREITKLHEEFWRGTLGEANEAFATRQPKGEITVLIEGQLISVDETPSEDFLEHELRE
LMAKGHTLSAAVKLVTEATSAKKKDVYALALRLFGK
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgctgctccgcctccaggccttcgctccagccctaaacgttccccgcaaccgt
tgcttcctctccccgctcggcctagcctccgcggccactgctccgctggctcgccgcctc
tccaccgccgcctccaccagctcgccggagccgccatcctcggaaccgaatctggagtca
ggtctgtatcttgtcgcaacgccaattgggaacctggaagatatcaccttgcgggcactg
cgtgtccttaaatgtgctaatgtgatattatctgaagacacaaggcattctggaaagctg
ctccagcactataacatcaaaacacctcttcttagcttccataagttcaatgagcgtgag
agagagcccagtatcttaaggaggcttcacgaaggtgaagcagttgcattgataagtgat
gccggaactccaggcattagtgaccctggcatggaattggctagactatgtgcagctgag
aaaatttctgtcgttcccattcctgggccttcggctgcaattactgctctttctgcatcg
ggtttgccatctaatgaattcacatttgttgggtttttaccaaagcatgctcggtcaaga
agagataggcttgagatatctgcccgtgaagctgctacacaaatattctatgttcctccc
catggtattcatcaatttcttgttgatgctgcttcatcttttggcgattcaaggtcatgt
gttattgcaagggagataacaaaattacatgaagagttctggcgtggaactctaggtgaa
gcaaatgaagcctttgcaactcgacagcctaagggagaaatcacagtgctcatagagggg
cagttaatttcagttgatgaaactccatcagaggatttccttgagcatgaactaagagaa
ttgatggcaaagggacataccctttcagcggcggtgaaattggtcactgaagctacatca
gcaaagaagaaagatgtttatgctcttgcattgaggttgtttggaaaatga
DBGET
integrated database retrieval system
