Panicum virgatum (switchgrass): 120651089
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Entry
120651089 CDS
T07260
Name
(RefSeq) putative serine/threonine-protein phosphatase PP2A-4 catalytic subunit isoform X1
KO
K04382
serine/threonine-protein phosphatase 2A catalytic subunit [EC:
3.1.3.16
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
pvir04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120651089
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
120651089
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120651089
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120651089
04131 Membrane trafficking [BR:
pvir04131
]
120651089
03036 Chromosome and associated proteins [BR:
pvir03036
]
120651089
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120651089
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
120651089
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Catalytic subunits
120651089
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120651089
Membrane trafficking [BR:
pvir04131
]
Autophagy
Other autophagy associated proteins
Others
120651089
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120651089
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120651089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
STPPase_N
Motif
Other DBs
NCBI-GeneID:
120651089
NCBI-ProteinID:
XP_039784388
LinkDB
All DBs
Position
9K:complement(27843541..27849698)
Genome browser
AA seq
315 aa
AA seq
DB search
MEGSAGSRGGGGCGGLDAQIEQLMECRPLPETEVKTLCEKAKEILMEESNVQPVKSPVTI
CGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPHRITIL
RGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSI
ENLDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNL
KLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCRNHSFIQFEPAPR
RGEPDVTRRTPDYFL
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggagggctccgcgggctcgcgtggcggcgggggatgcggcggcctggacgcgcagatc
gagcagctcatggagtgccgcccgctcccggagacggaggtcaaaacattgtgtgagaag
gccaaggagatattgatggaggaaagcaatgttcagccagttaaaagcccggtgacaatt
tgtggtgacattcatgggcaattccatgatcttgtagaacttttccggattggcgggaag
tgtccagacacaaactatttgtttatgggagattatgtggatcgtggctattactctgtt
gagaccgtaactcttttggttgcactgaaggtgcggtacccacaccgaattactattctt
cgtggaaaccatgagagtagacagatcacacaggtgtatggcttctatgatgaatgccta
cgaaaatatggcagtgcaaatgtctggaagatcttcaccgatcttttcgactattttcct
ttgacagcattggtggaatcagaaattttctgcctccatggtggtttatctccttccatt
gagaatctcgatagtgttagaagcttagatcgtgttcaagaggtccctcatgagggacct
atgtgcgaccttctgtggtctgatccagatgatcgatgtggctggggcatatctcctcga
ggcgctggatacacttttggccaggacatatcggaacagtttaatcacaccaacaatctt
aaacttgtagcccgggctcatcagttggttatggagggttataactgggcacatgaacaa
aaggtggtgaccatattcagtgcacctaattactgttaccggtgtggcaacatggcatcc
atccttgaagttgatgactgcaggaatcactcatttattcagtttgagccagctccgagg
agaggtgaaccagatgtgacacggagaacaccagattatttcctctga
DBGET
integrated database retrieval system
