Panicum virgatum (switchgrass): 120651126
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Entry
120651126 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120651126
KO
K19619
tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120651126
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
120651126
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GFIT
Motif
Pfam:
Exo_endo_phos
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
120651126
NCBI-ProteinID:
XP_039784434
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All DBs
Position
9K:complement(28696565..28700240)
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AA seq
452 aa
AA seq
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MPSRSPPPSPGAREWPCCRCTLINPICSDKCEACEAPRPLELDADSPGVVVAAAALTPLR
QLRRKRERSPAVADAECPVGVVAAPPSTPLRRLRRKGDRAPAVVDLPVEVESDSSPVVVG
ASGSPPRRCGRKRERAVSPDVVELCDSAGRAGGGGENGEGKAPAAKKASLRIHLDKKTIK
IMTYNVWFREDMELSRRMDALGDLIKHHSPDFICFQEITPYIYLLMQKSEWWQQYKCLLS
QEMSILKPYYCMQLSKVPVEPSEWIPFSNSIMGRELCITSVSTGEMTNLVLATTHLESPC
PAPPKWDQMYSKERVVQAKKSLEILGHCRNAILCGDMNWDDKRDGPFPLQDGWIDAWVEL
KPGEDGWTYDTKANSMLSGNRKLQKRMDRFLCKLEDFKIDNIEMIGKEAIPGISYFKEKK
VRKECRKIELPVFPSDHFGLVLTITKQEGGII
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgccctcccgctccccaccgccgtctccgggcgcgcgggagtggccctgctgccggtgc
acgttgatcaatcccatctgctccgacaaatgcgaggcatgcgaggccccgcgccccttg
gagctcgacgccgacagtcccggcgtcgtggtcgccgccgccgcgttgaccccgctccgg
cagttgcggaggaagcgggagcgctctcccgcggtcgcggatgccgagtgccccgtcggc
gtggtggccgcccccccgtcgacaccgctccggcggttgcggaggaagggggatcgtgct
ccggcggttgtggatctccccgtggaggtcgaatccgacagctcccccgtcgtggtaggc
gcctccgggtcgccccctcggcggtgcgggaggaagagggaacgcgctgtgtcaccggat
gtcgtcgagctctgcgatagcgcgggtcgagccgggggtggcggtgagaatggggagggc
aaggcgcccgccgccaagaaagcaagtcttaggattcatttggataagaagaccatcaaa
atcatgacatacaatgtctggttccgggaggatatggaactgagcagaaggatggatgct
cttggagatcttattaagcaccacagcccggactttatatgcttccaggagattacacca
tacatatatctgcttatgcaaaaatctgaatggtggcaacaatacaaatgcttgttgtca
caggagatgtctattctgaagccatattactgcatgcagttgagcaaagtgccagttgag
ccatctgaatggatcccattttctaactcaataatgggaagggagctttgcatcacaagt
gttagcacgggagagatgacgaacttggtgttagccacaactcacctagagagcccatgc
cctgcacctcctaagtgggaccagatgtatagcaaagaacgtgtagttcaggcaaagaaa
tccctagaaattctgggacactgccgcaatgcaatactctgtggggacatgaactgggat
gataaacgagacggcccctttcctctgcaggatgggtggattgatgcttgggttgagctg
aagcccggagaggatggctggacctatgacacgaaggccaacagcatgctgtcaggcaac
cgcaagctgcagaaacgaatggaccggtttctgtgcaagctggaagatttcaagattgat
aacattgagatgatcgggaaggaggcaataccgggcatctcgtacttcaaggagaagaag
gttcggaaagagtgtcgaaagattgaactgcctgtcttccccagcgaccactttggtctt
gttctgaccatcaccaagcaggagggtggcatcatctga
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