Panicum virgatum (switchgrass): 120651159
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Entry
120651159 CDS
T07260
Name
(RefSeq) transcription initiation factor IIE subunit alpha-like isoform X1
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120651159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120651159
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
120651159
Prokaryotic type
Archaeal type
TFE
120651159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
Dimerisation
A24_N_bact
zf-C2H2_6
wHTH-PRTase_assc
Motif
Other DBs
NCBI-GeneID:
120651159
NCBI-ProteinID:
XP_039784486
LinkDB
All DBs
Position
9K:29471259..29478588
Genome browser
AA seq
474 aa
AA seq
DB search
MASMEPFNRLVRLAARAFYDDISMKGDNQPKTSRGDNRGMAVVVLDALTRRQWVREEDLA
KALKLHSKQLRRILRFFEEEKLVTRDHRKESAKGAKAHNVAAAAASSEGPPVTKEGEEKI
KIHTHSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYICPSCNKRYSAFDALQL
VSYTDEYFHCETCNGELVAESDKLASEEMGDGDDNVRKRRREKLKDMQQRIEEQLKPLVA
QLERVKNLPAPEFGSLQTWERANIGAFANGDPSAADSSRNSQGQYGTPMPYMGETMIKLT
ELNQFTVVPLVEVVVDGEKEAGTESGKNGSDMKVLPPWMIKDGMNLTKEQRGETSKESKF
DEKSEAKDDKKQDSKDDQIIQEEYIKAYYEALRKKQEAEEAKRRMQQEGETFVSDSQSER
QVGKKYKREDEDEGIEWEEQQPTGNATEQYKLADLNAEAQESGDDEDEVEWEDG
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggcctccatggagcccttcaaccggctggtgaggctggcggcgcgcgccttctacgac
gacatatccatgaagggcgacaaccagcccaagacctcccgcggggataaccgcggcatg
gccgtcgtcgtcctcgacgcgctcaccagacggcagtgggtcagggaggaagatttggct
aaagcgctgaagctccactcgaaacagctgcggcgcattctccgcttctttgaagaggag
aaactagtcacaagggatcacaggaaggagtctgcaaaaggagcaaaagcacataatgtt
gcggctgctgcagcttccagcgagggtccaccagtcactaaggagggagaggaaaaaata
aagattcacacacattcatactgttgcttggattatgctcagatttgtgatgttgtaagg
taccgcattcaccgcatgaagaaaaaattgaaggatgaattggacagcagaaatacaatt
caacactacatatgtcctagctgtaataaaagatattcagcctttgatgcattgcaattg
gtaagctacacggatgagtacttccattgtgaaacctgcaacggtgaactggttgcagag
agtgacaagcttgcttctgaggaaatgggagatggcgatgacaatgttagaaagcgtagg
cgtgagaaattgaaggacatgcaacaaagaattgaagagcaattgaagccattggtggca
caacttgaaagagtgaagaatctacctgctcctgagtttgggagtctgcagacatgggaa
agagcaaatattggtgcttttgcaaatggtgaccctagtgcagctgattcatctaggaac
tcacaagggcagtatggtacgccaatgccttacatgggtgagacaatgataaaacttaca
gagctgaatcagttcacagttgtacctttggttgaagttgtagttgatggtgagaaagaa
gctggtactgaatcgggaaaaaatggttcggacatgaaagtcttacctccatggatgatc
aaagatggcatgaatcttacaaaggaacaaagaggagagaccagcaaggaatcaaaattt
gatgaaaaatcagaagccaaggatgacaaaaaacaggactcgaaagatgatcaaattata
caggaggaatacataaaggcttattatgaggccttgaggaaaaagcaggaagcggaagaa
gcaaagaggagaatgcagcaagaaggtgagacttttgtctctgattctcaatctgaacgc
caggtgggcaagaaatacaagcgggaggatgaagatgaaggtattgaatgggaagagcag
caacctacagggaatgcaaccgagcaatacaaattggcagatttaaatgcggaggctcaa
gaatctggtgatgatgaagatgaagttgagtgggaagatggttaa
DBGET
integrated database retrieval system
