Panicum virgatum (switchgrass): 120651228
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Entry
120651228 CDS
T07260
Name
(RefSeq) syntaxin-124-like
KO
K08486
syntaxin 1B/2/3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
120651228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120651228
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120651228
Membrane trafficking [BR:
pvir04131
]
SNARE
Syntaxin (Qa)
Stx-PM
120651228
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of epithelial cells
120651228
Exosomal proteins of other body fluids (saliva and urine)
120651228
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Syntaxin
SNARE
PigL_N
NPV_P10
HAUS-augmin3
Motif
Other DBs
NCBI-GeneID:
120651228
NCBI-ProteinID:
XP_039784589
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Position
1K:complement(9548657..9550139)
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AA seq
310 aa
AA seq
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MNDLFSSGSFKKYADLKQQVVLDDLEAGGGEAEGPDLDRFFEDVEAVKEDLRGLEALHRR
LRSAHEEGKTAHDAGAVKALRARADADVGQVLRRARAVKARLEVLDCANAASRKLPGCGP
GSSADRTRTAVVTGLGKKLKDLMDDFQGLRARMAAEYKETVARRYYTVTGEEAEDGTVEA
LISSGAGETLLQEAIQQGQAGRGQVLDAVAEIQERHDAVREMERSLRELHQVFLDMAALV
EAQGHQLNDIESHVARASSFVRRGAVELETAREYQKGSRKWACVAVVAGAVLVAVIVLPI
VINLHLLAVR
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaccttttctcgtcggggtcgttcaagaagtacgcggacctgaagcagcaggtg
gtgctggacgacctggaggccggcggcggcgaggccgagggcccggacctcgaccggttc
ttcgaggacgtggaggccgtgaaggaggacctgcgcgggctggaggcgctgcaccggcgc
ctgcggtcggcgcacgaggagggcaagaccgcgcacgacgccggcgccgtcaaggccctc
cgcgcccgcgccgacgccgacgtcggccaggtgctccgccgcgccagggccgtcaaggcc
cggctcgaggtgctcgactgcgccaacgccgccagccgcaagctccccggctgcgggccc
gggtcctccgccgaccgcacccgcaccgccgtcgtcaccggcctcggcaagaagctcaag
gacctcatggacgacttccagggcctgcgggcgcgcatggcggcggagtacaaggagacg
gtggcgcggcggtactacacggtgaccggcgaggaggcggaggacggcacggtggaggcg
ctcatctcgtcgggcgccggcgagacgctcctgcaggaggcgatccagcaggggcaggcc
gggcgcgggcaggtgctggacgcggtggcggagatccaggaacggcacgacgcggtgcgg
gagatggagcgcagcctgcgggagctgcaccaggtgttcctggacatggcggcgctggtg
gaggcgcagggccaccagctcaacgacatcgagagccacgtcgcgcgcgccagctccttc
gtgcgccgcggcgccgtcgagctcgagaccgcgcgggagtaccagaagggcagccgcaag
tgggcgtgcgtcgccgtcgtggccggggccgtgctcgtcgccgtcatcgtgctgcccatc
gtcatcaacctccacctcctggccgtcagatag
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