KEGG   Panicum virgatum (switchgrass): 120651228
Entry
120651228         CDS       T07260                                 
Name
(RefSeq) syntaxin-124-like
  KO
K08486  syntaxin 1B/2/3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04130  SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04130 SNARE interactions in vesicular transport
    120651228
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120651228
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120651228
Membrane trafficking [BR:pvir04131]
 SNARE
  Syntaxin (Qa)
   Stx-PM
    120651228
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of epithelial cells
   120651228
  Exosomal proteins of other body fluids (saliva and urine)
   120651228
SSDB
Motif
Pfam: Syntaxin SNARE PigL_N NPV_P10 HAUS-augmin3
Other DBs
NCBI-GeneID: 120651228
NCBI-ProteinID: XP_039784589
LinkDB
Position
1K:complement(9548657..9550139)
AA seq 310 aa
MNDLFSSGSFKKYADLKQQVVLDDLEAGGGEAEGPDLDRFFEDVEAVKEDLRGLEALHRR
LRSAHEEGKTAHDAGAVKALRARADADVGQVLRRARAVKARLEVLDCANAASRKLPGCGP
GSSADRTRTAVVTGLGKKLKDLMDDFQGLRARMAAEYKETVARRYYTVTGEEAEDGTVEA
LISSGAGETLLQEAIQQGQAGRGQVLDAVAEIQERHDAVREMERSLRELHQVFLDMAALV
EAQGHQLNDIESHVARASSFVRRGAVELETAREYQKGSRKWACVAVVAGAVLVAVIVLPI
VINLHLLAVR
NT seq 933 nt   +upstreamnt  +downstreamnt
atgaacgaccttttctcgtcggggtcgttcaagaagtacgcggacctgaagcagcaggtg
gtgctggacgacctggaggccggcggcggcgaggccgagggcccggacctcgaccggttc
ttcgaggacgtggaggccgtgaaggaggacctgcgcgggctggaggcgctgcaccggcgc
ctgcggtcggcgcacgaggagggcaagaccgcgcacgacgccggcgccgtcaaggccctc
cgcgcccgcgccgacgccgacgtcggccaggtgctccgccgcgccagggccgtcaaggcc
cggctcgaggtgctcgactgcgccaacgccgccagccgcaagctccccggctgcgggccc
gggtcctccgccgaccgcacccgcaccgccgtcgtcaccggcctcggcaagaagctcaag
gacctcatggacgacttccagggcctgcgggcgcgcatggcggcggagtacaaggagacg
gtggcgcggcggtactacacggtgaccggcgaggaggcggaggacggcacggtggaggcg
ctcatctcgtcgggcgccggcgagacgctcctgcaggaggcgatccagcaggggcaggcc
gggcgcgggcaggtgctggacgcggtggcggagatccaggaacggcacgacgcggtgcgg
gagatggagcgcagcctgcgggagctgcaccaggtgttcctggacatggcggcgctggtg
gaggcgcagggccaccagctcaacgacatcgagagccacgtcgcgcgcgccagctccttc
gtgcgccgcggcgccgtcgagctcgagaccgcgcgggagtaccagaagggcagccgcaag
tgggcgtgcgtcgccgtcgtggccggggccgtgctcgtcgccgtcatcgtgctgcccatc
gtcatcaacctccacctcctggccgtcagatag

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