Panicum virgatum (switchgrass): 120651320
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Entry
120651320 CDS
T07260
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120651320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120651320
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
120651320
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
ELL
zf-RING_2
zf-RING_13
Motif
Other DBs
NCBI-GeneID:
120651320
NCBI-ProteinID:
XP_039784725
LinkDB
All DBs
Position
9K:38204081..38225533
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AA seq
529 aa
AA seq
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MGSADLVLKPACEGCGNTSDLYGTGCKHTTLCSDCGKSMARSRARCLVCSLPITRLIREY
NVRANAITDKTYSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIHDNMREKYNRKPWI
LEDETGQYQYQGQMEGSQSATATYYLLMRHGKEFNAYPAGSWYNFSKIAQYKQLTLEEAE
EKMNKRKTSATGYERWMMKAAANGPAAFGSDMKKLEATTGGEKESARPKKGKSNEEGNNS
DKGEEDEEEEAARKNRLGLTKKGLDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA
VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGRAAGLNESDADEDE
EEEQEDESSPVLAPKQKDQVKDELVENSPVKPTPSGHARSTPAAKSKQKRKTGADDAKTS
GGAASKKAKVEWDMKASNIKEEAPSSAKPTSKPSASSKSGTNVLPVTEDEIRSVLLAVAP
VTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRDDKK
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgcggacctggtgctcaagcctgcgtgcgagggctgcggcaacacgtcggac
ctttacggcacgggatgcaagcacaccacgctctgcagcgactgcggcaagtccatggcg
cgctcccgcgcccgctgcctagtctgctccttgcccatcaccaggctcatccgggaatat
aatgtccgagctaatgctattacggataagacatactctattggaagatttgtcactggt
ttgcctcctttctcgaagaagaagagtgctgagaataagtggtctcttcataaggagggt
ctacaaggacgtcagatacatgacaatatgcgggaaaaatacaacaggaaaccatggatt
ttggaagatgaaacgggccaatatcagtatcaaggtcaaatggaaggatcacagtcagct
acagctacatattatttgttaatgaggcatggcaaggaatttaatgcctatcctgctggc
tcttggtataacttcagtaaaattgcacagtacaaacaactgacactggaagaggctgaa
gaaaagatgaataagaggaagactagtgcaactggttatgaacgttggatgatgaaagca
gctgcaaatgggccagctgcctttggttcagacatgaagaaacttgaggccaccactggt
ggggaaaaagaaagtgctcgtcctaagaaaggaaaaagtaacgaggagggtaataattct
gataaaggtgaggaggatgaagaagaggaagcagcacgcaagaataggcttggactcact
aaaaaaggcttggatgatgatgaggaaggtggaaaagatctagactttgatttggatgat
gaaattgagaaaggtgatgactgggagcatgaagaaacatttactgatgatgatgaggct
gtagatatcgatccagaggaacgggcagatttagctcctgaaattcctgctccacctgaa
attaagcaggatgatgaagagaatgaagaagaaggtggtctgagcaagtctggcaaggaa
ttaaaaaagctgcttggtcgtgctgctggactaaatgagtcagatgctgatgaggatgaa
gaagaagaacaggaagacgagtcatctccagtgctggctccaaagcagaaggatcaagtt
aaggacgaacttgtagaaaacagtccagttaaaccaacgccatcaggacatgcccgcagc
acacctgctgccaaatccaagcaaaagagaaaaacaggtgctgatgatgcaaaaacttct
ggcggtgcagcttcaaagaaagcaaaggtggaatgggatatgaaagcatcaaatatcaag
gaggaagcaccttcttcggcaaaacctacatcaaaaccctctgcttcatcaaaaagtggg
acaaatgtattacctgttacagaggatgaaatcaggagtgttcttcttgctgtggctcca
gtcaccacacaagatctagtatccagattcaagtctaggcttcgaggtccagaggacaag
aatgcttttgctgaaattctgaagaaaatttcgaagatacaaaagacgaatggccacaac
tatgttgtccttagagacgacaagaagtga
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