Panicum virgatum (switchgrass): 120651380
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Entry
120651380 CDS
T07260
Name
(RefSeq) alpha-mannosidase-like isoform X1
KO
K01191
alpha-mannosidase [EC:
3.2.1.24
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00511
Other glycan degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00511 Other glycan degradation
120651380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120651380
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.24 alpha-mannosidase
120651380
Membrane trafficking [BR:
pvir04131
]
Autophagy
Cytoplasm to vacuolar targeting (CVT) pathway
Selective cargos
120651380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_38N
Glyco_hydro_38C
Alpha-mann_mid
Laman-like_dom
Glyco_hydro38C2
Motif
Other DBs
NCBI-GeneID:
120651380
NCBI-ProteinID:
XP_039784789
LinkDB
All DBs
Position
9K:39853208..39865922
Genome browser
AA seq
1011 aa
AA seq
DB search
MAAALLLLVVLAAAALAGTEASAFAAASNNATAPPTPVVVVEGKLNVHLVPHSHDDVGWL
KTVDQYYVGSNTTIQGACVMNTLDSVVDALARDPARKFVVVEQAFFQRWWAEKSPTIQAI
VHKLVDSGQLEFINGGWCMHDEAAVHYIDMIDQTTLGHRMIKKQFNKTPRAGWQIDPFGH
SAVQAYLLGAELGFESVHFARIDYQDRAKRKADKGLEVIWRGSRTFGSSSQIFTNAFPVH
YSPPDGFDFEVLDDIIPVQDDMSLFDYNVEERVNDFVAAAIAQVNVTRTNHIMWTMGDDF
NYQYAESWFRNMDTLIKHVNKDGRVHALYSTPSIYTDAKHASNESWPVKYDDYFPYADST
NAYWTGYFTSRPTFKRYVRVYSGYYLAARQIEFLVGRSSLGLFTSSLEDAMGIAQHHDAV
SGTAKQHTTDDYSKRLALGASKVENGVSTALTCLTSSNRTCVSSTTKFEQCPLLNISYCP
STEKASSATKSLVVVVYNPLGWERSDFIRVPVNDENLAVKNSDGTIVESQLVEVDNVTSN
LRKFYVKAYLGITSDKAPKYWLVFQASVPPMGWNSYYISKSTGAAHNGRGYASAVVSPSN
DTIEVGPGPLKMSFSSASGQLKRMFNSVSGVDLPIQQSFLWYRSSEGDSMDSQASGAYIF
RPDGNTPTIVSSSVSLKVIRGPLVDEVHQQFSSWVYQITRLYKNKEHAEVEYTIGPIPVD
DDIGKEVITRMTANMVTNSTFYTDSNGRDFLKRVRNFREDWDLQVTQPVAGNYYPVNLGL
YIADGKYELSVLVDRAVGASSIQDGQLEIMLHRRLLKDDARGVGEPLDEVVCVGKDCEGL
TARGTYYVNVEKIGHGAHWRRTYGQQVYSPFLLAFTHEEETKWKSYSIPKASMMDANYSL
PNNVAIVTLQNLDDGTTLLRLAHLFQAAEDPQYSVLAKVDLRKVFGKRTIKELTETNLSA
NQKKSEMKKLNWKVVGETENGPTPVKGGPVDSQALVIELGPMEIRTFLLKF
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgcttctcctgctggtggtgctggcagcggcggcgctcgcgggtacggag
gcgtcggcgttcgcggcggcgtccaacaacgcgacggcgccgccgacgccggtggtagta
gtggagggcaagctgaacgtgcacctggtgccgcactcccacgacgacgtcggctggctc
aagaccgtcgaccagtactacgtcggctccaacaccaccatccagggcgcctgcgtgatg
aacacgctcgactccgtcgtcgacgcgctcgccagggaccccgcccgcaagttcgtcgtc
gtcgagcaggctttcttccaaaggtggtgggcagagaaaagcccgacaatccaagccata
gtccacaagctggtcgattcgggtcagctagagttcataaatggtgggtggtgtatgcat
gatgaagctgctgtacattacattgacatgattgatcagaccacacttggtcaccggatg
attaagaaacagttcaacaagactccaagagctggctggcaaattgatccttttggccat
tctgcagttcaagcatatttgcttggagcagagcttggttttgagtctgtacatttcgca
agaattgattaccaagatagggcaaagaggaaagcagataaaggcctagaggtcatatgg
cgcggctcaagaacttttggttcatcttcacagatcttcaccaatgcatttcctgtccat
tatagcccaccagatggctttgacttcgaagttttggatgatatcatacctgttcaggat
gacatgtcactgtttgactataatgtcgaagaacgtgtgaatgattttgttgctgcagca
atagcacaggtgaatgttacgcgcacaaatcatatcatgtggaccatgggggatgatttt
aactaccagtatgctgaatcctggttccggaatatggacacactcatcaaacatgtgaat
aaggatggccgagtgcacgcactgtattctactccctccatctacacagatgccaaacat
gcttcaaatgaatcgtggccagtaaaatatgatgattattttccctatgctgattcaaca
aacgcatactggactgggtattttacaagccgcccaacattcaagagatatgttcgagtg
tacagtgggtattacctggctgctcgtcaaatagaatttctggtgggtaggagttcctta
ggattattcacttccagcttggaagatgcaatgggaattgcccagcatcatgatgcagtc
tcaggtactgcgaagcagcacacaactgatgactactcaaaacggcttgctcttggagca
tcaaaggttgaaaatggtgtcagcactgctctgacttgtctcacaagctccaacagaaca
tgcgtgtcctctacaacaaaatttgaacagtgtccacttctgaatataagctactgccct
tcgacggagaaagcaagttccgcaacaaagagtctagttgtagttgtttacaatcctctt
ggatgggaacgtagtgacttcataagggttcctgtcaatgatgaaaacctagctgtaaaa
aactcagatggaactattgttgagtctcaactggttgaggttgataatgtgaccagcaat
ttaaggaagttttatgtgaaggcttatcttggaatcacatcagacaaggcccctaagtat
tggctagtatttcaagcttccgtaccaccaatgggatggaattcttactacatttcgaaa
tccactggagcagcacacaacggtagagggtatgcctctgcggtggtttctccaagtaac
gacacaattgaagttggaccagggcctctaaagatgtccttttcatcagcatctggacaa
ctcaagaggatgttcaattccgtctcaggagtggatttaccaattcagcaaagctttctt
tggtatagatcaagtgaaggtgattccatggactcacaggcatctggagcttatattttt
agacctgatggtaacacgccaactattgtttcatcatcggtgtcactgaaagttatccgg
ggacctctggtcgatgaagtgcatcaacaattcagctcatgggtatatcagataacacga
ctctacaagaacaaggagcatgccgaagttgaatacacgattggaccaatccctgtcgat
gatgacataggcaaggaggttatcacacgaatgacagcaaatatggtcacgaacagtaca
ttttatactgattcaaacggaagggatttcctcaaaagggtgagaaacttcagggaagat
tgggatcttcaagttactcaacctgttgcaggaaattactatccggttaatctgggacta
tatatagcagatggaaagtatgaactatctgtacttgttgatcgtgctgttggagcatca
agtatccaggatggtcagctagagattatgctacacaggcgtctgcttaaagatgatgct
cgaggtgttggagaaccactagatgaagttgtttgtgtgggtaaagattgcgaggggctc
acggccaggggcacttactatgtcaatgtcgaaaagatagggcatggagctcattggcga
cgcacatatggccagcaagtctattcgccctttctccttgcttttacacatgaggaggag
acaaaatggaaatcctacagtattcctaaagctagcatgatggatgcaaactacagtctt
cctaataatgtcgcaatcgtcactctgcagaatctagatgatggtaccacactgctccgc
ttagcccatcttttccaggctgctgaggaccctcaatattcggtgctagcaaaagttgat
ctgagaaaggtgttcgggaagagaactattaaggaattgaccgagactaacctttctgca
aatcagaagaagtcagagatgaagaaactcaactggaaggttgttggggaaactgaaaat
ggtcccactccggtaaaaggcggcccggttgatagtcaagctctggttattgagctcgga
cccatggagatacgcacgttcttgctgaaattttaa
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integrated database retrieval system
