Panicum virgatum (switchgrass): 120651431
Help
Entry
120651431 CDS
T07260
Name
(RefSeq) uncharacterized ATP-dependent helicase C29A10.10c-like isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120651431
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120651431
5.6.2.5 RNA 5'-3' helicase
120651431
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120651431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
UvrD_C_2
AAA_16
Motif
Other DBs
NCBI-GeneID:
120651431
NCBI-ProteinID:
XP_039784837
LinkDB
All DBs
Position
9K:41324620..41335010
Genome browser
AA seq
1391 aa
AA seq
DB search
MGSRGRMLFDLNELPAEADDEAAGVVPQEPAAVTQEAAVSVSQEAAIVVSQPQKSLPVPT
TYAPSLFQPGEGSQSQGILNNNAFKHASIGSGFQPFVRSKDSNNTKESIKAEDNMNSSMA
CSSMVANHITDNAAPKTEPGNQVSHIVEREEGEWSDADVISENAGSSVSNKDESVGTAST
HVKKECQDSEPHLIKSGDVTKDDTAAECSDAEMTDASKDQVLRGTTGLDSMPNLECKGNQ
PGDDLDACSRSKDVKGVEANYALKFAINPAKRPKLNEHKEAMLGKKRARQTVFINVEDAK
QAGTMKTSTPRRQSSFPAPIVTRTVKEASRAAGEKAAEKQNQQAIRERQSEMMGSERSNS
ADPSDQHAESNGDAEIGPQGRSKKMNAEEPYSDGYQQPVQRQASLKQSMDLKQPKGRPFS
SQRTAAGQNTADQKPASKRSIISKKQTFANNMQYQDSSVERLIREVTNDKFWHNPEEAEL
ECVPGSFESAEEYIRVFEPLLFEECRAQLYSSYEESLEAVGRDAHVAVRVKTVDRRERGW
YDVVVLPMHDYKWNFKEGDVAILSFPRPGSAAQSGRSSRRAVGSNEDAESECGRLVGTVR
RHMPIDTRDPIGAIIHFYLGDSFDSNSESNVLRKLQPRSTWYLTGLGSLATTQREYVALH
AFRRLNVQMQNAILQPSPEHFPKYEEQPPAMPDCFTPNFADHLHRSFNGPQLSAIHWAAT
HTAAGTSNGIVKKQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYAALLKKLAPE
SYKQVSCSTSTSSEAVAAGSIDELLQSMDQNLFRTLPKLCPKPRMLVCAPSNAATDELLA
RVLDRGFIDGEMKVYRPDVARVGVDSQSRAAQAVSVERRTDQLLMKGRDEVIGWLHQLKG
REQQLSQEIAYLQRELNMVAAAGRSQGSVGVDPDVLAQRDRNRDILLQKLAASVESRDKV
LVEMSRLLILESRFRVGSNFNMEDARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFD
MVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQA
GCPTILLSVQYRMHPQIREFPSRYFYQSRLTDSESVVKLPDEAYYRDALMAPYIFYDMSH
GRESHRGGSSSYQNIHEAQFALRLYEHLQKFLKTNGGKKVSVGIITPYKLQLKCLQREFK
EVMNTEEGKDIYINTVDAFQGQERDIIIMSCVRASNHGVGFVADIRRMNVALTRARRALW
VVGNANALMQSEDWAALIADAKARKCFMDLDSIPKDFLPTKAPSNTPGRNSSNNMRNMRT
GGPRPRHLDMFPEPRAGVNIRPDEDDRPNSVPRNGSYRNLDDFGRPGDRPRDNMQFGVPR
RPNSSNGRREV
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgggttctcgtggaaggatgttatttgaccttaatgaacttccagcagaagctgatgat
gaagctgctggtgtcgtgccgcaagaacctgctgctgtcacacaagaagctgctgtttcc
gtgtcacaagaagctgctattgttgtgtcacaacctcagaaatcccttcctgttccgaca
acatatgccccatctctgtttcagccaggggaaggatcacagtcacaggggatactaaat
aataatgcctttaagcacgcatccattggttctggttttcaaccatttgtgaggagcaaa
gactcaaataacacaaaggaatcgataaaggcagaagataatatgaattccagtatggca
tgttcatccatggtagctaatcacatcactgacaatgctgctccaaagacggagcctggc
aatcaggtgtcacacatagttgaaagagaagaaggagaatggtctgatgcagatgttatt
tctgaaaatgcagggagtagtgttagcaacaaagatgagtcagtcggaactgcaagtact
catgtgaagaaagaatgtcaagacagtgagccccatctcattaaatctggtgatgtgact
aaagatgatactgctgctgaatgtagtgatgctgaaatgactgatgcgtctaaagatcag
gttcttcgtggtaccacaggattggatagcatgccaaatttggaatgtaaaggaaatcaa
cctggagatgatttagatgcttgcagcaggtcaaaggatgttaaaggagtggaagccaat
tatgcattgaagtttgcgattaaccctgcaaagagacccaagttaaatgaacacaaggag
gcaatgcttggtaaaaaacgagctaggcaaactgtcttcatcaatgtagaagatgcgaaa
caagccggtacaatgaagacctcgacaccaaggaggcagtcatcctttccagcaccaatt
gtcacacgtactgtgaaggaggcttctcgtgctgctggtgaaaaagctgcagaaaagcaa
aaccagcaagcaatcagggagaggcaatctgaaatgatgggttcagaacgaagcaattct
gcagatcctagtgaccagcatgctgaatctaatggtgatgctgagattggtcctcagggt
cggtcaaagaaaatgaatgcagaagaaccttactcagatggatatcaacagcctgtacaa
agacaagcttcattgaagcaatccatggacttgaagcaaccaaagggtcgaccattctct
tcccaacggactgctgcaggacaaaatactgctgatcagaagccagccagcaaaaggtca
attatttccaaaaagcaaacttttgcaaacaatatgcaatatcaggactcatctgttgag
cgacttataagggaggtgacaaacgacaagttctggcacaatccagaggaggcagaactt
gagtgtgttcctggaagctttgaatcggctgaggagtacattagagtttttgagcctttg
ctttttgaggaatgcagagctcagctttatagttcgtatgaggagagtcttgaggctgtg
gggagggatgcacatgtagcagtacgagtaaaaaccgtggatagacgagaaagaggatgg
tatgatgttgttgttctaccgatgcatgattataaatggaatttcaaagagggtgatgtc
gctattctgtcattcccacggcctggttcagctgctcaatcaggtcgatctagcaggagg
gctgttggttcaaatgaagatgctgaatcagaatgtggacgccttgttggtactgttagg
cgccatatgcctattgatacacgcgatccaattggagctattatccatttttatcttgga
gattctttcgattctaacagtgaatctaatgtcctgaggaaactccaacctcggagtact
tggtatctaactggactaggttctcttgcaacaacacaaagggaatatgttgctttgcat
gcgttccgccgtctgaatgtgcagatgcaaaatgcaatacttcaaccgagtccagagcat
ttcccgaagtatgaagagcagccacctgccatgccagactgcttcactccaaattttgct
gatcaccttcaccgtagtttcaatggccctcaactgtcggcgattcactgggctgcaacg
catacagctgcaggcacaagcaatggtattgtgaagaaacaagaaccgtggcctttcaca
ttggtacaaggtcctcctggtacagggaaaactcatactgtatgggggatgctaaatgtt
attcatcttgttcagtatcaacattactacgctgctttgctcaagaaacttgctcctgaa
agctacaaacaagttagttgtagtactagtaccagctcggaggctgttgctgcagggtca
attgatgaacttttgcagagcatggatcagaacctatttcgcactcttcccaagctttgc
cctaagcctcggatgcttgtttgtgccccatcaaacgctgcaacagatgagctgcttgct
cgtgttcttgaccgcggttttatagatggagagatgaaggtctaccgccctgatgttgca
cgtgttggagttgattcacagtctcgtgctgcccaagctgtttcagttgaaaggaggacg
gatcagcttttaatgaagggccgtgatgaagtaattgggtggctacatcagctaaaaggc
cgcgagcagcaactgtcacaggagatagcttatcttcaaagggaactaaatatggttgca
gcagctggtagatcccagggttcagtaggggtagatcctgatgttcttgcccaaagggat
cgcaaccgcgatattctacttcagaaacttgctgcgtcagttgaaagtagggataaagta
ctggtggagatgtcaaggctgctgatattagaaagcaggttccgtgttggcagcaacttc
aatatggaagatgctagggctagtctggaagccagttttgccaatgaagctgagattgtt
tttacaacagtgtcaagcagcgggcgtaagttattttctcgcctaactcatggctttgat
atggttgttattgatgaggctgctcaggctagtgaagtaggagtccttcctccattggca
cttggtgcagctagatgtgtcctggttggtgacccacagcaacttcctgctactgttatt
agcaaagcagcaggaacgttgctttacagcaggagtcttttcgagaggtttcagcaggct
ggttgtcctaccattttgctgtcagtgcaatacaggatgcatccccagatccgtgaattt
ccatcaagatacttttatcaaagtcgccttacagatagtgagagtgttgtcaaattacct
gatgaagcctattacagagatgcacttatggcaccttatatcttttacgacatgtcacat
ggccgtgagtctcataggggtgggtcatcttcataccagaatatccatgaagcacaattt
gcattgcgtttatatgagcatcttcagaagttcctgaaaaccaatggtggcaagaaagta
tctgttggtataatcacaccatataagttgcagttgaaatgccttcagcgggaattcaag
gaggttatgaatactgaggaagggaaggatatctacataaatacagtcgatgcttttcaa
ggccaggagcgtgacatcattattatgtcatgtgtacgtgcttcaaaccatggtgtgggt
tttgttgctgatatacgccgtatgaatgtagctctaacgcgagctaggagagctctgtgg
gttgttggtaatgccaatgctctcatgcagtctgaggactgggcggctctgatagcagat
gcaaaggccaggaaatgtttcatggacctggatagcattccgaaggacttcctacccacg
aaggctccttctaacaccccaggcaggaattcttccaacaacatgcgtaacatgaggact
ggtggtccaagaccaagacatttggacatgtttccagaacccagggctggtgtgaacatc
aggcctgatgaagatgaccgtcccaattctgttccaagaaatggcagttacaggaatttg
gatgattttgggcgacctggtgaccgccccagggataatatgcagtttggagttcccagg
agaccaaattcatctaatggtaggagagaagtgtga
DBGET
integrated database retrieval system
