Panicum virgatum (switchgrass): 120651446
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Entry
120651446 CDS
T07260
Name
(RefSeq) U1 small nuclear ribonucleoprotein 70 kDa-like
KO
K11093
U1 small nuclear ribonucleoprotein 70kDa
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120651446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120651446
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
120651446
Complex B
120651446
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
U1snRNP70_N
RRM_1
Motif
Other DBs
NCBI-GeneID:
120651446
NCBI-ProteinID:
XP_039784857
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Position
9K:41525890..41531007
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AA seq
499 aa
AA seq
DB search
MADYGHGGGQMRGNPDSRPRGQGQRPNVQQLKLMGQIHPTGLTPNLLKLFEPRPPLEYKP
PLEKRKLPAYTGMAQFVSQFAEPGDPEYAPPVPTCETRAEKKARIRNNKLEQGAAKVAEE
LQKYDPQSDPNATGDPYKTLFVARLNYEMSEHKIKREFEAYGPIKRVRLVTEKDTSKPRG
YAFIEYMHTRDMKNAYKQADGRKVDNKRVLVDVERGRTVPNWRPRRLGGGLGSSRMGGAD
TDKKDSAREQQHGGRPRSEEPRRDDRRAERDREKSRERVRERERDERPRERSHDRTRDRD
SREEKHHHRDRERTRDRERGKDREREHGRDRDRDRDRDHDRRDRDRDRDRGRDYDRERDR
GRSHDRHRERGRDRGERDYERPSHERERGHMHERDADYGNGGPKHDKNLSSYGQDYGYGH
YEQHKGHEAFGYGQDGRGHETEHSKRHDHEYYRVDSYSKMETNYQVQPNNAEPEGPEEGE
AYEEGDYQYHRAGEHMNEA
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggccgactacggccacggcgggggtcagatgcggggcaacccggactctcgccccagg
ggccaggggcagcgccccaacgtccagcagctcaagctcatggggcagatccacccgacg
gggctcacgcccaacctgctcaagctcttcgagccgcggccgccgctcgagtacaagccc
ccgctcgagaagcgcaaattgccggcatacacagggatggcgcagtttgtgtcgcaattt
gccgagcctggggatcctgaatatgctccccccgtgcccacgtgtgagacaagggctgaa
aagaaggctaggattcgcaataataagctcgaacaaggtgcagctaaggttgctgaagag
cttcagaagtatgacccgcagagtgatcccaatgccactggtgacccatacaaaacactc
tttgttgcaagacttaactacgagatgtctgaacacaagattaaacgggagtttgaagct
tatggtcctattaagagggttcggcttgtaactgagaaggatacaagtaaacctagagga
tatgctttcatagagtacatgcacacacgtgacatgaaaaatgcatacaagcaagcagat
gggagaaaagtggacaataaaagggtattagttgatgttgagcgtggtagaactgttcca
aattggcgtcccaggagattgggtggtggactgggatcaagcaggatgggtggtgcagat
actgataaaaaagattctgctagggagcaacaacatggtgggcgtcccaggtcggaagag
cctaggagagatgataggcgtgctgaaagggatcgggagaagtctcgtgaaagggtacgg
gaaagagaacgtgatgagagaccccgtgagcgttcacatgaccggactcgtgatcgtgat
tcacgagaagagaagcaccaccatagagaccgtgagaggactcgggacagggagagaggg
aaagaccgggaaagagagcatggccgtgaccgtgaccgtgaccgtgaccgtgaccatgat
cgtcgtgacagggacagggacagggatcgtggtagggactatgatagagaaagggaccgt
ggccgctctcatgatcgccatcgtgagaggggcagggaccgtggtgaaagagattatgag
cgccccagtcacgagcgggaacgtggccacatgcacgagagggatgcagactatggcaat
ggtgggccaaaacatgacaaaaatctgtccagttacgggcaggattatggctatggacat
tatgagcaacacaaaggccatgaggcatttggttatggtcaagatggacgtgggcatgaa
actgagcactcaaagaggcatgaccatgagtactatcgtgttgactcgtacagtaaaatg
gaaacaaactatcaggtgcagcctaacaatgcagaacctgaagggcctgaggaaggtgag
gcatacgaggaaggtgactaccagtatcaccgagctggcgagcacatgaacgaggcttga
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