Panicum virgatum (switchgrass): 120651567
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Entry
120651567 CDS
T07260
Name
(RefSeq) transcription factor MYC2-like
KO
K13422
transcription factor MYC2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04016
MAPK signaling pathway - plant
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
120651567
04075 Plant hormone signal transduction
120651567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120651567
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
120651567
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
bHLH-MYC_N
HLH
bHLH-TF_ACT-like_plant
CDC27
bHLH_INO4
GAF_2
GTP1_OBG
Motif
Other DBs
NCBI-GeneID:
120651567
NCBI-ProteinID:
XP_039785027
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All DBs
Position
9K:complement(43952777..43955508)
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AA seq
702 aa
AA seq
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MNLWTDDNASMMEAFMASADLPAFPWAGASSAAATPPPPPPQAPPAMMAPGFNQDTLQQR
LQAMIEGSRETWTYAIFWQSSVDAATGASLLGWGDGYYKGCDDDKRKQRPLTPAAQAEQE
HRKRVLRELNSLISGAAAAPDEAVEEEVTDTEWFFLVSMTQSFLNGSGLPGQALFAGQPT
WIASGLSAAPCERARQAYNFGLRTMVCVPVGTGVLELGSTDVVFQTAESMAKIRALFGGG
GGAGGGSWPPVQPPAPPQQPAPGADQAETDPSVLWLADPVMDIKDSLSHPSAEISVSKPP
PPPPQIHFENGSTSTLTENPSPSVHAPPPPPAPAAAPPQRQHQQNQGPFRRELNFSDFAS
NPSSMAAAPPFFKPESGEILSFGADSNGRRNQSPAPPAATASLTTAPGSLFSQHTATLTA
AAANDAKNNTTTNNNKRSMEATSRASNTNHHPAATANEGMLSFSSAPTMRQSTGTGAPAK
SESDHSDLDASVREVESSRVVAPPPEAEKRPRKRGRKPANGREEPLNHVEAERQRREKLN
QRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALESDKDTLHAQIEALKKERDAR
PAPHAAGHDAGPRCHAVEIDAKILGLEAMIRVQCHKRNHPSARLMTALRELDLDVYHASV
SVVKDLMIQQVAVKMASRIYSQEQLNAALYSRLAEPGAAMGR
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgtggacggacgacaacgcctccatgatggaggccttcatggcctctgccgac
ctccccgcctttccctgggccggcgcctcgtcggccgccgccacgccgccgccgccgccg
ccgcaggcgccgccggcgatgatggcgccgggcttcaaccaggacacgctgcagcagcgg
ctgcaggccatgatcgagggctccagggagacctggacctacgccatcttctggcagtcc
tccgtggacgccgccaccggcgcctcgctgctcggctggggggacggctactacaagggc
tgcgacgacgacaagcgcaagcagaggccgctcacgcccgccgcccaggccgagcaggag
caccgcaagcgcgtgctccgcgagctcaactcgctcatctccggcgccgccgccgccccc
gacgaggccgtcgaggaggaggtcaccgacaccgagtggttcttcctcgtctccatgacg
cagtccttcctcaacggctcgggcctcccggggcaggcgctcttcgccggccagcccacc
tggatcgcctccggcctctccgccgcgccgtgcgagcgcgcgcgccaggcctacaacttc
ggcctccgcaccatggtctgcgtccccgtcggcacgggggtgctcgagctcggctccacc
gacgtcgtcttccagaccgccgagagcatggctaagatccgcgcactctttgggggcgga
ggcggagcagggggcggctcgtggccgcccgtgcagccgccggcgccgccgcagcagccc
gcgcccggagcggaccaggcggagacggacccctccgtgctctggctcgccgacccggtc
atggacatcaaggattccctgtcgcacccgtcggccgagatctccgtcagcaagccgccg
ccgccgccgccccagatccacttcgagaacgggagcacgagcacgctcacggagaacccc
agcccctccgtgcacgcgccccctcccccgccggcgccggctgccgcgccaccgcagcgg
cagcaccagcagaaccagggccccttccgccgggagctcaacttctccgacttcgcgtcc
aatccctcctccatggcggcggccccgcccttcttcaagcccgagtccggcgagatcctc
agcttcggcgccgacagcaacggccggaggaaccagtcgccggcgccccccgccgccaca
gccagcctgaccaccgcgcccgggagcctcttctcgcagcacacggcgaccctgacggcc
gccgcggcgaacgacgcgaagaacaacaccaccaccaacaacaacaagcgctcgatggag
gccacatcccgcgccagcaacaccaaccaccacccggcggcgacggcgaacgagggcatg
ctgtccttctcgtcggcgccgacgatgcggcagtcgacgggcacgggcgcgccggccaag
tcggagtcggaccactcggacctggacgcctcggtgcgcgaggtggaaagcagccgcgtg
gtggcgccgccgcccgaggcggagaagcggccgcgcaagcgcgggcggaagccggccaac
ggccgggaggagccgctgaaccacgtcgaggcggagcggcagcggcgcgagaagctcaac
cagcgcttctacgcgttgcgcgcggtggtgcccaacgtgtccaagatggacaaggcgtcg
ctgctcggcgacgccatctcctacatcaacgagctccgcggcaagctgacggcgctcgag
tcggacaaggacacgctgcacgcgcagatcgaggcgctcaagaaggagcgcgacgcgcgg
ccggccccgcacgccgccgggcacgacgccgggccgcggtgccacgcggtagagatcgac
gccaagatcctggggctggaggccatgatccgcgtgcagtgccacaagcgcaaccacccg
tcggcgcggctcatgacggcgctgcgcgagctggacctggacgtctaccacgccagcgtc
tccgtcgtcaaggacctcatgatccagcaggtcgccgtcaagatggccagccgcatctac
tcacaggagcagctcaacgccgccctctacagccgcctcgcggagccgggcgccgccatg
ggcaggtaa
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