Panicum virgatum (switchgrass): 120651607
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Entry
120651607 CDS
T07260
Name
(RefSeq) eukaryotic translation initiation factor 3 subunit B-like
KO
K03253
translation initiation factor 3 subunit B
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120651607
03012 Translation factors [BR:
pvir03012
]
120651607
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
120651607
Translation factors [BR:
pvir03012
]
Eukaryotic type
Initiation factors
eIF-3
120651607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eIF2A
WD40_WDHD1_1st
RRM_1
ANAPC4_WD40
Beta-prop_ELP1_1st
WD40_Prp19
Motif
Other DBs
NCBI-GeneID:
120651607
NCBI-ProteinID:
XP_039785106
LinkDB
All DBs
Position
9K:44623531..44628015
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AA seq
721 aa
AA seq
DB search
MALAISMEGIEARARELGVDLSAVDLDSITLPAGEDFGILSDDEEILRDEDPPELEMGLS
NIIVVDNLPVVPPEKFEKLENVIRKIYSQIGVIKENGLWMPVNPETKKTYGYCFIEYNTP
QEAELAREKTNGYKLDKSHIFAVNMLDDFEKYMKVPDTWTPAEIKPYTPGENLLKWLTDE
KARDQFVIRAGTLTEVYWNDARKLAPELVFQKQYWTDSFIQWSPLGTYLATVHRQGSQVW
GGENGFERLMRFAHPMVKLIDFSPGERYLVTYSSHEPSNPRDTHRVILNIFDVRTGKVMR
DFKGSADEFTTGGNVGVSGVSWPIFRWGGGKDDKYFARLGKNVISVYETDTFSLLDKKSL
KVENVVDFSWSPTDPIISLFVPEMGGGNQPARVSLVQIPGKEELRQKNLFSVSDCKMYWQ
NNGEYFAVQVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRF
AIVHGDGPRPDVSFYTMRTANNTSRVSKLTTLKAKQANALYWSPAGRFIVLAGLKGFNGQ
LEFYNVDELETMATGEHFMATDIMWDPTGRYLATAVTSVHEMENGFQIWSFNGKHLYKVS
KDHFYQFIWRPRPPSLLSPEKEEEIAKNLKKYSKKYEQEDQDAFNQLSEQERKRRTQLQE
EWDSWVAKWKQMHEEERAYRRELRDGEASDEEEEYEAKEVEVEEVVDVTEEVLAFDLLDQ
E
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggcaatctccatggaaggaatcgaggcgcgtgcgcgggagcttggggtggac
ctctccgccgtcgatctggactccatcaccctcccggccggcgaggacttcggcatcctc
agtgatgatgaggagatacttcgagatgaggacccccctgaacttgaaatgggtttatct
aacattatcgtagtggacaatctgccggttgttcctccagaaaaatttgagaagcttgag
aatgtcattaggaagatatacagccaaattggagtgataaaagaaaatggtctatggatg
ccggtaaacccagagacaaagaaaacgtatggctactgtttcattgagtataatacccct
caggaagctgagcttgcaagggaaaaaaccaatgggtacaagctcgacaagtctcatatc
tttgcagttaacatgcttgatgactttgagaaatacatgaaggttcctgacacatggacg
cctgcagaaataaagccatacactcctggagaaaatcttctgaaatggctaactgatgaa
aaggcccgagatcaatttgtcatccgtgctggtacattgacagaagtttactggaatgat
gctagaaagctggcacctgaacttgtgtttcaaaagcagtactggacagacagtttcatt
cagtggtcccctcttggaacatacttggcaacggttcataggcaggggtcacaggtgtgg
ggcggtgaaaatggcttcgagcggttgatgcgttttgctcatccgatggtcaaactgatt
gacttttctcctggtgagagatatttggtcacatacagcagccacgagcccagcaatcct
agagacacacatagggttatcctaaatatctttgatgtaaggactggaaaagttatgcga
gacttcaagggaagtgctgatgaatttaccactggcgggaatgttggtgtttctggtgtt
tcgtggcccattttcaggtggggtggtggaaaggatgataagtatttcgcaaggcttggg
aagaacgtaatatcggtctatgaaacagatacattctcccttctcgacaagaagtcattg
aaggtagaaaatgtagtggacttcagctggtcccccactgatccaatcatatccttgttt
gtgcctgaaatgggtggtggcaaccagccagcaagggtgagccttgtgcaaattccaggc
aaagaggaactgcggcagaaaaaccttttcagtgtcagcgactgcaagatgtattggcag
aataatggagaatattttgctgtccaggttgatagatacacaaaaacaaagaagagcacc
tacactgggtttgagttgtttagaattaaggagagagacatcccaattgaggtccttgaa
ctcgagaacaagaatgacaagatcattgcatttgcctgggaacctaaaggccatcgcttc
gcaatcgttcatggtgatggccctaggcctgatgttagtttttacaccatgcgaacagca
aataacactagccgtgtgtcgaagctcaccactctcaaggccaagcaagctaatgcgctg
tattggtctcctgctggccgcttcattgttcttgctggcctgaagggattcaatggacag
ctggaattctacaatgttgatgagcttgaaacgatggcaacaggagagcattttatggca
acagacataatgtgggatcctactggaagatatcttgcaactgctgttacctcagtccat
gaaatggagaatggatttcaaatatggtccttcaatggcaagcacctttacaaggtgtca
aaggatcacttctatcagtttatttggcggccaagaccaccatcacttttatctcctgag
aaagaagaggagatagcaaagaaccttaagaagtacagcaagaaatacgaacaagaagac
caggatgcgttcaaccagctgagcgagcaggagcgcaagaggcggacacagctccaggaa
gaatgggactcgtgggttgccaagtggaagcagatgcatgaggaggagcgtgcatatagg
agggagctcagggacggggaggccagcgatgaggaggaagagtacgaggccaaggaggtt
gaggtggaggaagtggtggatgtcactgaagaagttctcgcatttgacctcctggatcag
gagtga
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