Panicum virgatum (switchgrass): 120651640
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Entry
120651640 CDS
T07260
Name
(RefSeq) RNA-binding KH domain-containing protein PEPPER-like
KO
K21444
poly(rC)-binding protein 3/4
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120651640
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
120651640
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Gene cluster
GFIT
Motif
Pfam:
KH_1
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-GeneID:
120651640
NCBI-ProteinID:
XP_039785140
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Position
9K:complement(45098516..45101739)
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AA seq
448 aa
AA seq
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MADPSDAAVAAVEVGAPDSLPPPAAEEADAAAAEEAAKRWPGWPGDSVFRLVVPVLKVGS
IIGRKGELIKRLVEETKARVRILEGPVGATERIVLVSGKEDPSLELPPAMDALVRVFKRV
IGIADGAAEGTQAAAAPGVCAARLLVPGAQAINLIGKQGATIKSIQESTGATIRVISVDE
RERPFYVTDDERIVEIQGETEKVLKALQAVSNHLRKFLVDHSVLPLFEKTNTTVSQDRSG
DGWSDMSHPPIGSAQVNQPPPVVDEYILPAKRDTLYLEREPLVDHSIHRSGVSLYGRDPA
LSTLRPSGMHGAGPLLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGS
PDDITVEIKGTSSQVQAAQQLIQDSLAAHREPVRSSYVGAGLDPVYRPSYSQYGSSTYSS
SSLPSYSSIDDGRYPSSGMGGYGSSYRY
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggccgacccatccgatgccgccgtcgccgccgtggaggtcggggcgccagattcgctg
cccccgccggccgcagaggaggccgatgccgccgcggcggaggaggccgcgaagaggtgg
cccggttggcccggggacagcgtgttccggctcgtggttccggtgctcaaggtagggagc
atcatcgggcgtaagggcgagctcatcaagcgcctcgtcgaggagactaaggccagggtc
cgcatcctggaggggcccgtcggagcaaccgagcgcattgtcttggtgtctgggaaagaa
gatccaagcttggagcttcctccagctatggatgctctagtgagagtttttaaacgtgtc
attggaatagcagatggtgctgctgagggcactcaggcagctgctgcacctggtgtatgt
gctgccagactgctggttcctggagctcaagctataaacctaattgggaagcaaggtgcc
acaatcaagtcaattcaggagagcactggtgctacaatccgggttatctcagtagatgaa
cgagagcggccattctatgtaactgatgatgaaaggatagttgagatacaaggtgaaaca
gagaaagttctaaaagcacttcaagcagtttctaaccatcttcggaagtttttggttgac
catagtgtactcccattatttgaaaagactaatactacagtgagccaagatcgcagcggt
gatggttggagtgatatgtcacatcctccgattggttctgcacaagtaaatcaaccacct
ccagtagttgacgaatatattcttccagcgaagagggacactttgtatcttgaacgagaa
cctctagtagatcatagcattcatcgctcaggagtgtcactttatgggcgtgatcctgcc
ttgtcaacattacgaccctctgggatgcatggtgctgggcctctacttacacagataact
caaacaatgcaaatcccacttacctacgcagaggacattataggagtcaaaggagcaaat
atcgcgtacatacgagctaatagtggggctgttgtgacaattcaggagagtttgggcagc
cctgatgatattactgttgaaataaaggggacgtcttcacaagtacaagctgcccaacag
ctcatccaggactccttagctgcacaccgagaacctgtcagaagcagctatgtgggagca
ggattagatccagtgtacaggcccagctactcacaatatggcagttccacttattcgtcg
tcatcactgccatcttattctagcatcgatgatggtagatatccgtcttcaggcatgggc
ggctatgggtcaagttaccggtactag
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