Panicum virgatum (switchgrass): 120651701
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Entry
120651701 CDS
T07260
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120651701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120651701
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120651701
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120651701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
120651701
NCBI-ProteinID:
XP_039785227
LinkDB
All DBs
Position
9K:46080443..46099664
Genome browser
AA seq
2446 aa
AA seq
DB search
MIPFNPAVAAEVRALIQGADESTFDPIYRELCQLADCSPDGCVLLLQVCVDELLLNVGGV
KNPQPLVATIFRYCLEKPYFSTSFYEVVSTIPVNDGFLETLSNELELSAAERVGVGLALS
DSENPDLNLEGRKFTIAQIEELCSSHAHSVSNERIQEIVVFLLQTGGLSKHLDSFTNIIS
LLNPKERPFYVPVSLQEANSNQANSSRHMELCFGSLDDDFDSLLSEIGKQISLPDIITEL
GYGCAYDIAHCKEILLHFEPLDDTAISKLLGAVVCTRIGVGETQNTYSIFLSAFGNCQTV
DSSQLTAWNIDVLVDSINEIAPGTNWAHVMENLDHEGFNIPDETAFRLLMSIYSRACKDP
FPLHAICGSLWKNTEGQLSFLKHAVASPNDTFTFTHCTKKMPFPDLGTLNQGNQAWYCLD
LLEVLCQLAELGYAKPVRTMLDYPLIHCPEVLLLGVSHINTTYNLIQHEVLSHVFPAMLK
NNTHSRLMNYLWHINPYLTLRGFVDAHSDINCLLRTVEICEDLKILATVLDSTPFAFSIR
LATAAFRKDHSNLEKWLTEKLSTQRATFIEECVKFLKEIMISTNYGAAEGSIQHPQVTIS
SICQDCCPVFIKVLRSHSGQLLSNQLVDELRRVEAVYESRNHGDVGRDMPSPDVGEDIEA
QANIYFQQMFAGQISVDAMIQMLLRFKESKDKRELSIFNCMISNLFEEYKFFPKYPDAQL
KLAAVLFGSVIKHQLVAHLALGIALRGVLDALRKSIDSKMFMFGTTALEQFMDRVIEWPQ
YCNHILQISHLRGTHAELVSAIEQALAKISLSQNEPNLGPMLPVDQRGSGSQSIENIESS
EASWQFINSTPTQLDRTISSFALQQRNQGFLGERSKGSTNSSQAKPMMPIGQPPLASTSS
DLGSNPKATVSLSSQASPHHSSSVSGLSQPSSFPRSRSSAPSGILRQPSYTTGFGAALNI
ETLVAAAERRDTPIEAPPSEVQDKIFFMINNISTSNIEAKAKEFNEVLQEQYYPWFAQYM
VMKRASIEPNFHDLYLKFFDKVNSKSLNKEIMKATYENCKVLLQSDLIKSSSEERSLLKN
LGSWLGKFTIGRNQTLRAKEIDPKILIVEAYERGLMIAVIPFTSKILEPCHSSIAYRPPN
PWTMGILSLLVEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSLLKDRIRQVVGNPDF
SNKDVSTSQTSAAAEVSSGIVPSMSHVELQPEISSTSRATSLPNMLNQYGAPIRLPSNSM
VEDDKVALIMPEQVTSHSLTQVAPPQTPSPSPFSLSQLMAAIPRADIYFRINEKLNSLGP
QLQYSKYVSLYKLILHCNFLCSSDNTCDIHRIMDVALDKAIKEIIGPVIQRSVTIASRTT
KELILKDYAMESDDGTISRAAHLMVGTLAGSLAHVTSKEPLRVALLSHLRSLVQNLISNS
ETTEQISQILVNDNLDLGCALTETVATRKAIEMIDADIKQPFSQLRRQKELQGSAYYDVS
PYTQGLTRVPDVLRPKPSGNLSAVQRRVYEDFITVWHSQSSQNAAATTPATTVPVAPPDS
TIVSVHGPILAPSASSSFSTLQFAPFTSTNQSTELIPDKTDSATTQLSCVSAQVSTTDSS
GQVSGITNVASVFPPMASGDLLVGELATATKDIGAAIQASPAVAINRLGSAFPELLNTGD
ALDRYQLVWQKLETLIANNGKDAEIQSVIAEVPDILLRCVSRDEAALAVAQKVFRSLYEN
ASKSTFVTWLLATLVAVRDVCKLVAKELTSWVIYSDEEKKFNLDIIIGLIRSDLLNLGEY
NVHLAKLIDGGRNKTATEFAISLIQTLVTQDFSSVSELFNVVDALSKLATRPGSPDSLQH
LIEIARSSFNNNANYAASKDEKVLSGRPLMNNEEDNADGIAFASAADFQDKVAVLFSEWC
QICDHPAMGDSVYSHYIVQLQQNGLLKGDDVTDRFFFSLTELAIAHSIVPEQTIAPTGLS
QQPSPQQQISYFSIDSYSKLVASVVKQSVDLGPNKGSLLHKILAVTARIIQKDAEEKKVS
FNPRPYFRLFINWLNELTTSDLHHDGTNFQVLTAFANAFHILQPLRVPAWSFAWLELVSH
RCFMPKLLMCNLQKGWPFFQRLLVDLFKFMEPYLRNAELGQPILLLYKGTLRVLLVLLHD
FPEFLCDYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEISIAPRIM
TDVDGALKAKQMKAQVDEYLKRPEGSLFLTDLKQKLLLPQNEANVAGTRYNVPLVNSLVL
YVGMQAVQQLQQNKANASASAQINQSPQMDIFQIETATELFRNLVMTMDTEGRYLILNAI
ANQLRYPNSHTHYFSFIILYLFAEATQEIVQEQITRVLLERLIVNRPHPWGLLITFIELI
KNPRYSFWTRSFTHCAPEIEKLFESVARSCGGKGADDGIGLADGGH
NT seq
7341 nt
NT seq
+upstream
nt +downstream
nt
atgatcccgttcaaccccgcggtcgccgcggaggtgcgcgccctgatccagggcgccgac
gagtccaccttcgaccccatctaccgcgagctctgccagcttgcggattgcagtcctgat
gggtgcgttttgttgcttcaagtttgtgtggacgaattgctgctgaatgttggtggggta
aagaatccccaacctcttgtagccaccatcttcagatattgtttggagaaaccctacttc
agcaccagtttctatgaagtagtgagcacaatacctgtcaatgatgggttccttgaaaca
ctgtccaatgaacttgagctatccgcagctgagagggttggagttggacttgctctgtca
gattcggaaaatccagacttgaatctggaagggaggaagtttacaattgctcaaattgag
gagctatgctcaagtcatgcacactcggtatcaaatgaacggattcaggagattgtggtg
tttcttctccagactggtggcctctcaaagcatttggactcttttactaacattatctcc
ctactaaatccgaaagagaggccattctatgttcctgtctcactccaggaagccaatagc
aatcaagcaaattcttcaagacatatggagctgtgctttggtagcttagatgatgatttt
gattcccttctatccgaaattggaaaacagataagcctccctgatattatcactgaactg
ggatatggatgcgcttatgatattgctcattgtaaagagatactattgcactttgagcct
cttgatgatacggcaatctctaagttacttggtgcggttgtttgcactcgtatcggtgtt
ggagagactcaaaacacatattccatattcctttctgcttttgggaactgccaaacagtt
gattcatctcagttgactgcctggaatatagatgtccttgtggattcaatcaatgaaatt
gcacctggaactaactgggcgcatgttatggaaaatcttgatcatgagggttttaatatc
cctgatgaaactgctttccgtttattgatgtctatatattctcgggcttgcaaggaccca
ttcccacttcatgcaatctgtggatcattgtggaagaatacagaaggacaactgtcattc
ttgaaacatgcagtggcttcgcctaatgatacatttactttcacacattgtaccaagaag
atgccttttccagacttgggaactcttaaccaaggcaatcaggcttggtactgcctagac
cttcttgaggtgttatgtcagcttgctgaacttggctatgcaaagccagtacgtacaatg
cttgactatcccctgattcattgtcctgaagtgttgcttctcggtgttagccacatcaat
actacatataatctcattcaacatgaagtattgtctcatgtttttcctgctatgttaaag
aacaacacacacagccgtcttatgaactacctctggcatatcaacccttaccttactctt
cgaggatttgttgatgctcattctgatataaattgtcttctgagaaccgttgagatatgt
gaagacctaaagatcttggccactgtccttgattccaccccgtttgcttttagcattaga
cttgctacagctgcctttaggaaagatcatagcaatctggagaaatggctgactgaaaag
ttgagtacacaaagagcaacttttattgaggaatgtgttaaattcttgaaagaaattatg
ataagcacaaattatggtgctgcggaaggttccattcaacatcctcaagttactatttca
agtatctgccaggactgttgccctgtatttataaaggttcttcgttctcactcggggcag
ctgttgtctaaccaactagtggatgaacttaggagagttgaagcagtgtatgaatcaagg
aatcatggtgatgtaggaagggacatgccctctcctgatgtaggggaagacattgaagct
caggcaaatatttattttcaacagatgtttgctggacagataagcgttgatgctatgata
caaatgcttttacgcttcaaagaatctaaagacaagagggagctatcaattttcaactgc
atgatctcaaatttgtttgaagaatacaagttcttcccaaagtatccagatgcacaactt
aaattagctgctgtgctttttggctctgtcataaagcatcaacttgtggcccaccttgca
ctcggaattgctctacgcggtgttcttgatgccctgcgtaaatctattgattcaaagatg
tttatgtttggtacaacagcgttggagcagtttatggatcgagtaattgagtggccacag
tattgcaaccatatactgcagatttcacatcttcgcggaacacatgctgaattagtttct
gctattgagcaagcacttgccaaaatatcattgagtcaaaatgagccgaatttggggcct
atgcttcctgtggatcagcggggttctggttcacagtctatcgaaaacatagagtcttcg
gaagcatcatggcagttcataaattcgacaccaacacagctagataggacgatttcttca
tttgcactacaacagaggaaccaaggtttcctaggggagaggtccaaaggctcaactaat
agtagtcaagcaaaacccatgatgcctattggccagccacctctcgcttcaacttctagt
gatctgggttctaatccaaaggctactgtgtcattgtcctctcaagcttctccacatcat
tctagctccgtgtcaggtctttcacaaccttctagttttccacgatctagaagttcagct
ccatcaggcatccttcgacaaccttcctacactacaggttttggagctgctttaaatatt
gagactcttgttgctgcagctgaacgaagagatacaccaatcgaggccccaccatctgaa
gttcaagacaaaattttcttcatgatcaataatatttccacttccaatatagaggctaaa
gcaaaagagtttaatgaggttttacaggagcagtattatccttggtttgcgcaatacatg
gtcatgaaaagggctagcatcgaaccaaatttccatgacttgtatttgaagttctttgac
aaggttaactcaaaatccttgaataaggaaataatgaaagctacatatgagaactgcaag
gtcttgttacaatcagatcttatcaaatctagttctgaagagcgttcgttgctaaaaaat
cttggtagctggcttggaaaattcactataggtaggaatcaaacattacgagcgaaggaa
atcgacccgaaaatcttaatagttgaggcttatgaaaggggtttgatgattgcggtcatt
ccgtttacttcaaagattcttgagccttgccattcaagtatagcatatcgacctccaaat
ccttggacaatgggtattcttagtctacttgttgaaatatataacctaccaaatctcaaa
atgaacttgaagtttgacattgaggtcttgtttaagaatctcagtgttgacatgaaagat
gtaaaaccatcttctcttcttaaagatcggattcgtcaagttgtgggaaatccagatttt
tcaaataaagatgttagtacatctcaaacatcggcagctgcagaggtctcttctggtatc
gttccttcaatgagccatgtggaactccaacctgagattagtagcacttcacgtgccaca
agccttccaaatatgcttaaccagtatggagcacccattcgcctaccttccaacagcatg
gttgaagatgataaggttgctttaataatgcctgaacaggttacctctcacagcctgacc
caggttgcacctcctcaaacgccatcaccatccccgttttctctgagtcagcttatggca
gcaatcccacgtgccgatatatattttagaatcaacgaaaagcttaactctcttggtcca
cagttgcagtatagcaagtatgtttctctatataagcttatcttgcactgtaatttcttg
tgctcatctgacaacacttgtgatattcatagaatcatggatgtggctctggataaggct
attaaggagattataggtcctgtcattcaaagaagtgtaacgatagctagccgaaccacg
aaggagcttattctaaaggattatgcaatggaatctgatgatggtaccatatctcgcgct
gcacatttgatggttggtacattagcaggaagtttagcccatgttacttccaaggagcct
cttcgcgttgctttgttatctcatcttcgaagtcttgttcagaacctgattagtaacagc
gaaaccactgaacaaattagtcaaattcttgttaatgataatctggatcttggatgtgct
ctaacagagactgtggcaacacgcaaggccattgagatgattgatgcagacatcaagcaa
cctttttcacaactcaggagacaaaaggaactacagggctctgcgtattatgatgtttcc
ccttatactcaaggtcttacacgtgtccccgatgtacttcgtccaaaaccttctggtaac
ttgtctgctgtccaacggcgagtatatgaggacttcatcactgtttggcatagccagagc
agtcaaaatgctgcagcaacaactcctgctacaaccgtgcctgttgccccacctgattcc
actattgtttcagttcatggcccaattttagcaccatcagcctccagtagtttctcaact
ctccaatttgccccattcacatctacaaatcagtcaacagaattaatacctgacaagacg
gattctgctactacacaactttcttgtgtttctgctcaagttagcacaaccgacagttct
ggccaagtttctggaatcacaaatgttgcttctgtttttccgcctatggcctctggcgac
cttctagtgggagaattagcaactgcaactaaagatataggtgctgcaatacaggcttcg
cctgcagttgctattaatcgtctaggatctgcttttccggaactgctgaatactggtgat
gcgctggatagatatcagcttgtttggcagaagctggaaaccttgattgcgaataatgga
aaagatgcagaaattcagtctgttattgcggaagttcctgatatcttgctcagatgcgtc
agtcgggatgaagctgcgttagcagttgcacagaaggttttcagaagtttatatgaaaat
gcttcaaagagcacttttgtcacatggcttctagcaacccttgttgcagtgcgtgatgtt
tgcaaacttgttgcgaaagagttaacgagctgggtaatatattcagatgaagagaagaaa
tttaacttggacataattattggacttattcgttctgatctgcttaatcttggggagtat
aatgttcatttggcaaagcttatagatggtggaagaaataagactgcaacggaatttgct
atatcactcatccagacattggttacccaagatttcagtagtgtctccgagctttttaat
gttgttgatgccttgtcgaagcttgcaacgaggcctgggtcacctgattccttgcagcac
ttgattgaaattgcaaggagttccttcaacaacaatgctaattatgctgcttcgaaggat
gaaaaggttctatctggtcgtcctttgatgaataacgaagaagataatgctgatggcatt
gcttttgctagtgctgctgattttcaggataaggttgcagtcttgttttctgagtggtgt
caaatatgtgatcatcctgctatgggtgattcagtgtatagtcattacattgtgcagttg
caacagaatggcttgctgaagggagatgatgtgactgaccgtttcttctttagtctaacg
gaacttgctatcgcacactctatagtgcctgagcaaaccattgctcctactggactatct
cagcaaccatccccgcaacagcagatttcatatttttcaattgattcatattcaaaactt
gtggcttcagttgtcaaacagtctgtggatttaggaccaaataaaggcagtcttctccat
aagattcttgctgtgacagctagaatcattcagaaagatgctgaagaaaagaaagtttct
ttcaatcctcggccgtattttcgtttgtttataaattggctaaatgagcttactacttct
gaccttcaccatgacggcactaattttcaggttttgactgcatttgcaaatgcattccat
attctgcaacccttgagagttccagcttggagttttgcttggcttgagttggtgagccac
cgatgcttcatgccgaagttattgatgtgcaatttgcaaaaaggatggccgttttttcag
aggttgcttgttgatttgttcaaattcatggagccatacttaagaaatgctgaactggga
caacctattctccttttgtacaaaggaacattaagagttctgcttgtgctactgcatgat
ttccctgaatttctttgtgactatcacttcagtttctgtgatgtgattccgccaagctgt
attcaaatgcgtaatgttattcttagtgcctttccacgcaatatgagacttccagatccc
tccactcctaacttaaagattgatctgctagcggagatttcaatagctcctcgaatcatg
actgatgtggatggtgctttgaaggcaaagcaaatgaaagctcaggttgatgaataccta
aagagaccagaaggctccctctttttaactgatctaaagcagaagttgttgctaccacaa
aatgaggcaaatgttgcagggactcgttacaatgttcctctagttaattcacttgtcctt
tacgttggtatgcaggctgtgcagcagttgcagcaaaacaaggcgaatgcatcggcatca
gcacaaattaaccaaagtcctcaaatggatatattccagattgaaacagctactgagctg
ttcagaaaccttgtaatgactatggatacagaaggtcgctaccttattctcaatgcgatt
gctaaccagcttcgctacccaaatagccatacccactacttttccttcatcattctgtac
ttgtttgccgaggcaacccaggaaattgtccaggagcagataactagagttcttttggaa
aggttaattgtcaaccgtcctcatccttggggattactcattactttcattgagctgata
aagaacccacgctacagcttttggactagatcctttacacactgtgcgccggagatagag
aagctgttcgagtcagtggcaaggtcctgtggagggaaaggcgcggatgatggaattggt
ctcgcagatggtggccactag
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integrated database retrieval system
