Panicum virgatum (switchgrass): 120651763
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Entry
120651763 CDS
T07260
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like isoform X1
KO
K12600
superkiller protein 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120651763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120651763
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
120651763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_14
TPR_11
TPR_17
TPR_19
TPR_8
TPR_9
TPR_12
TPR_7
BTAD
Motif
Other DBs
NCBI-GeneID:
120651763
NCBI-ProteinID:
XP_039785305
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Position
9K:47311172..47321144
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AA seq
1196 aa
AA seq
DB search
MPETAAEANLRRQLEQTLAADPSIPLHHHNLGVFLWGRAEAEQEGDGDEALRLRAAAAEH
FIAAAKLNPNDGVPFRFLGHHYARSRETQRAAKCYQRAVALNADDAEAGEALCDLLDVEG
KESLELAVCKEAAGKSPRAFWAFQRLGYLQVHQRKWSDAIQNLQHAIRGYPTSADLWEAL
GLAYHRLGMFTAAVKSYGRAIELDSSRVFALIESGNIQLMLGYFRKGVEQFRSALEMAPH
NHSVYFGLASALLAWSRNCVTTGAFGWAATLLKEASEAAKICASLTGNLSCVWKLHGDVQ
LAFARCFPWVDGKIKRDVDAQMFKDSVQEWRNAILSAANGAKLSYQRALHLTPWEANVHN
DTAICLDLIYSMDGNNRHNPNVWELSEKMSLGALILEPVNKDFWVTLGSMSSDLALKQHS
FIRALHLDMSLSEAWAYLGKFYRQSGDKQLSKVAFDRARSIDPSLAFPWAGMSAENYHQS
GGSTVNESFESCLRAAQILPLPEFQIGLGTIAARTGNLLSPQVLMAVRQAVHRAPHYPES
HNINGLVSEVRSDFQSAIRFYQQARSALGMMNNSKSDNKDAFADVSANLARSLYKAGLAT
DAVRECEELRSQGLLNMDGLQIYALALWKTGRSEEALSVSRNLAENLSGMKPESATVALG
FICTLTYAISGKDPAAAVIHKLPGQLNFSSQLKFIISALDALHPNKRFQLPQLSMPPRLT
SYEVMSEVHSNIALGKAIEGEMDKPLRVDASLSYLKKVLHMYPDCSLVRNQLGSLLLWSG
DWMASHKALRVTSVTHGHTSNMGLRSAHQIQASAMACCYATCTSYPKFTFPTCEHQYLSG
HDEIHHLQRWVHREPWNQDARYLLVLAIFRKAREEKYPKHICIILKRLIMQVLSNVSNSH
ENTVVQYEVFLLLLLSSEICLQSLDYENCIAQAKAALRMTASSCVDTFFAHLQLCRAYAV
QGDLLNSRNEYMNCLKKHTNTEMGWVMLKHLESACSLEASSDEIYKNLRECIKRNGSDMS
KWMSLFNLAYAQCFIGDENFASAEEALAQACAEGDPDSCILFLNGATCMEIARRFAAPQF
ISRAAPSLRKAQQKSHASLPLVSLLLAQAEGSLGSKTKWEKNLRLEWFSWPPELRPAEVY
FQMHLLARQSAAAASQQNQLVETMQSPESWLLRAIHLNPSCSRYWKALLHLMDVDA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaactgcggcggaggccaacctccgcaggcaactagagcaaaccctcgccgcc
gacccctccatcccgctccaccaccacaacctcggcgtcttcctatggggccgcgcggag
gcggagcaggagggcgatggggacgaagcgctgcggctccgtgccgcggcggcggagcat
tttatcgccgcagccaagctgaaccccaacgatggcgtccccttccgcttcctcggccac
cactacgcgcgtagccgcgagacgcagcgggcggccaagtgctaccagcgcgcggtggca
ctcaacgctgacgatgctgaggctggggaggctctatgtgacttgctagatgtcgagggg
aaggagagcttggagcttgctgtgtgcaaggaggcagctggcaagtcccctcgcgcattc
tgggcctttcagaggcttggctacttgcaggttcatcaaaggaaatggtcagatgccata
caaaaccttcagcatgcaatacgaggttacccaacatctgcagatttatgggaggcactt
ggtctggcataccaccgtttgggcatgttcactgcagcagtaaagtcatatggacgagct
attgaacttgatagttccagggtctttgcgttgatagaaagtggaaacatccagctaatg
cttggctatttcagaaagggagttgagcaatttcgttctgctttggaaatggctccacat
aaccattcagtatactttggacttgcttctgcattgcttgcatggtcaaggaattgtgta
actactggggcctttggctgggctgctaccctgctgaaggaagcatctgaagctgccaaa
atttgtgcttcattgactggaaacctttcatgtgtttggaaattgcatggagatgttcag
cttgcattcgcgagatgctttccgtgggtggatgggaagatcaagagggatgtagatgcg
cagatgttcaaagattctgttcaggagtggagaaatgcaattctgtcagcagcaaatggt
gcaaaactctcatatcaacgtgctttgcatcttacaccctgggaagctaatgttcacaat
gatactgctatttgtcttgatctgatatattccatggatggcaataacagacacaacccc
aatgtttgggagctgtcagagaaaatgtcacttggtgccttgatactggaaccagttaat
aaggatttctgggttacattgggttccatgtcaagtgatctagctttgaagcagcattct
ttcattagagcacttcatcttgatatgtctctttctgaagcttgggcataccttggaaag
ttttacaggcaatcaggtgataaacaattgtctaaagtagcatttgatcgagctagaagc
attgatccttcgttggcctttccgtgggctggaatgtcggcagaaaattatcaccaatct
gggggcagtacagtaaatgaatcttttgaaagctgcttgagggctgcacagatcctacct
ctgccagagttccagattggccttggaacaattgctgcccgtactggtaatcttctttca
cctcaggtgttgatggctgtaaggcaggctgttcatcgagcacctcattacccagagtct
cacaatataaatggcttggtttctgaagtgcgatcagattttcagtctgcaatcagattt
tatcaacaagcgagatctgctttaggcatgatgaacaattccaagtcagacaataaagat
gcttttgctgatgtttcagcgaaccttgcccggtcactatacaaggctggtcttgcaact
gatgcagtgcgggagtgtgaagagttgagatctcaaggactgctgaacatggatggattg
cagatatatgctcttgcattgtggaaaactggacggagtgaggaagctctttctgtatct
agaaacttggctgaaaatttatctggcatgaaaccagagagtgctactgtggctttggga
ttcatatgcacattgacgtatgcaatttctgggaaggaccctgcagctgcagtcattcac
aagcttcctggtcaactcaatttcagctcgcagttgaaatttattatttctgcattggat
gctttgcatccaaacaagcgtttccagttgcctcagttgagtatgcctcctaggcttaca
tcctatgaagtgatgagtgaagtccactcgaatattgctcttgggaaggcaattgagggg
gaaatggacaagcctttgagggttgatgctagcttgtcttacctgaaaaaggttctgcat
atgtatcctgattgcagtttagtgagaaaccaacttggatctctgctcctgtggagtgga
gattggatggcttctcataaagcattaagggttacttctgtgacacatggtcacacatcc
aatatgggcctaagatctgcacatcaaattcaagcatctgcaatggcttgttgctatgct
acctgcacatcttatccaaagttcacttttccaacatgtgaacaccagtacttaagtgga
catgatgaaatacaccacttgcaaaggtgggttcatcgtgagccatggaaccaagatgca
cgttacctgcttgtccttgctattttccgaaaagcccgtgaagagaagtaccccaaacat
atttgtatcattttgaagaggctcattatgcaagtgctatccaacgttagcaattcacat
gagaacacagttgtgcagtatgaggtgttcttgcttcttcttttatcttcagagatctgt
ttgcaatctttagactatgaaaattgcattgctcaagctaaagctgctctaagaatgact
gcctctagctgtgttgatactttctttgcacacttgcaactgtgtcgggcctatgcagtg
caaggggatcttttgaactccaggaatgagtacatgaactgcttgaaaaaacatacgaat
actgagatgggttgggtaatgctgaagcaccttgaatctgcatgttcattggaggcctct
tctgatgaaatatataaaaatcttcgtgagtgcattaaaaggaatggcagtgacatgtcg
aaatggatgtctcttttcaatctagcctatgctcaatgctttataggggatgaaaacttt
gcaagcgctgaagaagctcttgctcaggcatgcgctgaaggagatccggatagctgcatc
ttattcctcaatggtgcgacctgtatggaaattgcacggaggtttgcagctcctcaattt
atatcccgtgcagctcccagcctcagaaaggcccagcagaaatcacatgcatctttacct
ctggtgtcacttctactggcacaagccgagggcagccttggctccaaaaccaagtgggag
aagaaccttcgcctggaatggttctcatggcccccagaactgcggcctgcggaagtgtac
ttccaaatgcacctgctggcgaggcagtctgccgcggcggcttcccagcagaaccagctg
gtggagacgatgcagagcccggagagctggctgcttcgggcgattcacctgaacccgtcc
tgttcccggtactggaaggctctgctgcatcttatggacgtggatgcgtaa
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