Panicum virgatum (switchgrass): 120651806
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Entry
120651806 CDS
T07260
Name
(RefSeq) DDB1- and CUL4-associated factor 8-like
KO
K11804
DDB1- and CUL4-associated factor 8
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120651806
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120651806
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_NOL10_N
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
120651806
NCBI-ProteinID:
XP_039785375
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All DBs
Position
9K:complement(47626445..47629122)
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AA seq
496 aa
AA seq
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MRRPWRHPTPAAAAVARRHGAADLCFREVGDLLPRHFARRAAGSEDLVMRLQVHRKLDRH
TGCVNTVGFNELGDTLISGSDDQMVMLWDWDTGSVKLEFHSGHGGNVFQARFMPCTDDRT
IVTCAADGEVRLAKVQDGGDVSTTLLGEHGGRAHNLSVEPGSPYIFYSCGEDGLVQHFDL
RTNTATKLFLCRSSLRKSGFSSCVHLNAIAMDPRNPNLFAVGGSNAYARVYDIRKHKWDG
SSDFGHPSDCYCPPHLVDDKHVGITGLAFSHLSELLVSYNEENIYLFPKNGGLGSDPKSS
IKIGATEGYKSTMAASGQDIAHPAPQVYVGHRNRETVKRVSFIGPNDEYVASGSDCGRIF
IWRKRDGKFLRAMEGDECIVNCIEPHPHDMTIASSGIDNDVKMWTPSAIERAPVVNIEEL
RPRKRRAKLWHFDLPELLIRHLLASERRQQSTEEDSSEDLEDSTGLLSLVLRAADGSVSS
TDDEEISDGSEEFAVN
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcccgtggaggcacccgaccccggcggcagccgccgtcgcgcggcgccacggc
gcggcggacctctgcttccgcgaggtcggggacctcctcccccgccacttcgcccgccgc
gcggccggctccgaggaccttgtgatgcggcttcaggttcaccggaagcttgacaggcac
acgggctgcgtcaacacagtgggcttcaatgagctcggtgataccctcatatcagggtcc
gacgaccagatggtgatgctgtgggactgggacactggttccgtcaaattggagttccat
tctggccatggtgggaatgtgttccaggcacgcttcatgccctgcacagacgataggacc
attgtcacctgtgctgctgatggcgaggtgagactcgccaaggtacaggatggtggagat
gtgtccactacattgcttggtgaacacgggggaagggctcataatttgtctgtagagcct
ggtagcccttatatcttttacagctgtggcgaggatggccttgttcaacattttgatctc
agaacaaacacagccacaaaactattcctctgcagaagttctttgaggaaatcaggattc
tcctcctgtgttcaccttaatgcgattgcaatggatccaaggaacccaaatctttttgca
gttggaggaagcaatgcatatgctcgtgtgtatgacatccgcaagcacaagtgggatggg
tcatctgattttggtcacccatctgactgctattgtccaccacatcttgttgatgataaa
catgttgggataacagggttagcattctctcacctgagtgagttgcttgtatcttataat
gaagagaatatttatctattccctaaaaatggagggctgggatctgacccaaagtcatct
atcaagattggagcaactgaaggttacaaatcaacaatggctgcctctggacaagatatt
gctcatcctgcacctcaggtatatgtcggtcatcgcaatcgtgaaactgtgaagcgtgtg
agtttcattgggccaaatgatgaatacgttgctagtgggtcagactgtggtcggatattt
atttggagaaagagagatgggaagtttttacgagccatggagggtgatgagtgcatagtg
aattgcattgagcctcatcctcatgatatgacaattgcaagcagtggaattgataatgat
gtaaaaatgtggactccctctgccatcgagcgagcacctgtggtaaatattgaggagttg
agacctcgcaagagaagagccaagctttggcactttgacttaccagagctgttgatccgg
cacttactggcatcagagcgtaggcaacaatcaactgaagaagattcatcggaggacctt
gaggacagcacaggattacttagtctagtactacgtgctgctgatggaagtgtgtcatcg
actgatgatgaagagatctctgatggctctgaagagtttgcagtcaactga
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