Panicum virgatum (switchgrass): 120651816
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Entry
120651816 CDS
T07260
Name
(RefSeq) ubiquitin domain-containing protein DSK2a-like
KO
K04523
ubiquilin
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120651816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120651816
03051 Proteasome [BR:
pvir03051
]
120651816
Membrane trafficking [BR:
pvir04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
120651816
Proteasome [BR:
pvir03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
120651816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBQLN1
ubiquitin
UBA
Rad60-SLD
STI1-HOP_DP
UBA_7
Rad60-SLD_2
TSC22
Dsc3_N
Ubiquitin_5
TSP9
Motif
Other DBs
NCBI-GeneID:
120651816
NCBI-ProteinID:
XP_039785382
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Position
9K:47750714..47755466
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AA seq
570 aa
AA seq
DB search
MASGGEGAGSGESPPAAAGEASAAAGATLHIRCANGSKFTVQADLAATVGAFKEVVAGSC
DVPAPQQRLIYKGRILKDEQTLESYGVETDHTIHLVRGVASPAASGAPAAASPLASSTPS
SGPAGGLGGLFPGVGAPRSGRPSGLFGAGFPELEQVEQHLSQNPNLMREIMNMPAMQNLM
NNPDLIRNMIMSNPQLREIMDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAM
SNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTASNPFAALLGNQGSNQPGQPATNA
PIPGSESTTGTPAPNTNPLPNPWSTNAGGAQGAARSGPTSNARTGATGGLGGLGSPDLSS
LLGGLAGSQRSGAAGGLGGLGSADLGSMLGGSPDASFLNQMLQNPAMMQMMQSIMSDPQT
MNQLLNFNPNARNLMESNTQLREMFQNPEFLRQLTSPETLQQLLSFQQSLLGQLGQQPPS
QDGNSLGSATGMQGNPSLDTLMSMLSGLGSGGGLGVPNNSNVPPEELYATQLTQLREMGF
IDNAENIQALVATAGNVHAAVERLLGNLGQ
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcggaggcgaaggcgccgggagcggcgagtccccgcctgccgccgcgggggag
gcgtcggcagcggcgggggcgacgctgcacatccggtgcgcgaacggctccaagttcacg
gtgcaggcggacctggccgccacggtgggcgcgttcaaggaggtcgtggccgggagctgc
gacgtgccggcgccgcagcagcgcctgatctacaagggccgcatcctcaaggacgagcaa
accctagaaagctacggtgttgagacagatcacacaattcacttggtgcgtggtgttgcc
tcaccggctgcatcaggtgcacctgctgctgccagtccccttgcttcatctactcctagc
agtggcccagcaggtggcctgggaggtctatttccaggtgttggtgctccaagaagtggc
aggccatcaggtttatttggggcaggatttccagaattagaacaagttgagcagcattta
agccagaatccaaacttgatgagggagataatgaatatgccagcaatgcaaaatctcatg
aacaacccagatttaatacgcaatatgatcatgagcaacccacagctgcgcgagatcatg
gatcggaatccagatcttgcccatgtgctcaatgacccaagtgtcctccgccaaactctc
gaagctgctagaaaccctgaaatcatgagagagatgatgcggaacacggacagagctatg
agcaacattgaatcttctcctgaagggtttaatatgctccgacgcatgtatgaaactgtc
caggagcctttcctaaatgcaacaacaatgggtggggaaggcaacacagcgtcaaaccca
tttgcagctcttcttggcaatcaggggtctaaccaacctggtcaacctgcaacaaatgct
ccaattcctggttccgagtcaacaacaggaacccctgctccaaatactaatccacttcca
aatccctggagcaccaatgctgggggtgcacaaggagcagcacggtctggtcctactagc
aatgcaagaactggtgccactggtggcctgggagggttgggttcaccagatttgagcagt
ttgctcggtggtcttgctggcagtcaaagatctggtgctgctggtggtctaggagggttg
ggatcagcagatcttgggagtatgcttggtggttcacctgatgcttcttttcttaatcag
atgttgcaaaaccccgcaatgatgcagatgatgcagagcattatgtctgatccacagacc
atgaaccagttgcttaacttcaacccgaatgcacgcaacctgatggaatcaaacactcag
ctgagggaaatgtttcagaatccagaatttcttcgccagttgacatcgccagagactttg
cagcaattactctcatttcagcagagcttattaggacagcttggtcaacaaccacctagc
caggatggcaacagtttgggcagcgccacaggtatgcaaggaaaccctagccttgacacc
ttgatgagtatgctcagcgggcttggatcaggaggtggccttggtgttccaaataattcc
aacgtgccgccggaggagctctatgcaacacagcttactcagctccgagaaatgggtttc
attgacaatgcagagaacatccaagcactggttgctactgctgggaatgtacatgccgcg
gtggagcgcctccttgggaatcttggccagtag
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