Panicum virgatum (switchgrass): 120651976
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Entry
120651976 CDS
T07260
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120651976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120651976
03036 Chromosome and associated proteins [BR:
pvir03036
]
120651976
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120651976
Coactivators
SAGA/TFTC/STAGA complex
120651976
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
120651976
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
RST
rve
DUF7325
SCIMP
Motif
Other DBs
NCBI-GeneID:
120651976
NCBI-ProteinID:
XP_039785589
LinkDB
All DBs
Position
9K:49812926..49831699
Genome browser
AA seq
968 aa
AA seq
DB search
MKHRSELCSIYQSFTRMVHTQFSTSIRIFRSDSGGEYLSNTFHKFLTSEGTLAQLSCPGA
HAQNGIAERKHRHIIETARTLLIASFVPSHFWGEAVSTSVYLINRQPSSKLSGKCPGEVL
FALLPQENKSLLNHGHGQWQDPVKNETANQDSQQQEQTYLHRSDQPSRPEMVSQGSDNKH
LPSNTPKECELLKVKQEPGNTSQQGIVAQQQPLQQMKSEQTPVVAQQQPMQQMKSEQTPI
LAQQQPMQQMKSQQTPHTNQTNGATTTAKAPVVTFHMLLPILRQYIDKEKDMQVQSIFAK
LRKNEVSKEHFLKVVRNIVGDKVLKLAISEYQMQHTAQAQRNSQTNPSSYSLLSQVSGQQ
TVPRGSMTDEQEADPGAHTIPTKQAIDSLRPPQFRPSSSGQMQSIRGFSPSQSNVHKANE
TGNMSDGKGVHVLQTRPPNNLPPVQTMQHHVQHPQTSSPMFGTNSIHARPFPRPVGSPAA
SFRPQMTDSNQRAQLVQGAATTVSGSVPTQSIVPGNAPTNQPTWQQSANKEQKTNSFAPT
APNKETISQNSESSQNSFVAMHAKQVNQSMGSSKGGRGMENQSKLSASKSSTTTSLSQTQ
SHGTQAEPKLQVQSSVQAPPAAAKTPQRKASGQKKPLEALGSSPPPSSKKQKTSGGFHEQ
SIDQLNDVTAVSGVNLREEEEQLFSAPKDETRVSEAARRVVQLEEEKLILQKGPLTKKLA
EIMRKCNLKVIGTDVERCLSMCVEERLRGFISNIIRFSKQRVDVEKSRHRFYPLSSDVRS
HIMRVNREAKEQWDKKQAEDAERIRKQNDGDGNTNIDLEKDKNETRASSKHAKYKEDDDK
MRTTAANVAARVAAGGDDMLSKWQLLAERNKQRSEGGDGSSGSVQGNMLQHKPSPKSGKG
SREEHENEKRGYSTMLGSGGVRRSSLTKVARRVSVKDVIAALEREPQMSKSLLLFELYGR
PSTEPAAK
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgaaacatcgatctgaattgtgctccatctaccagtctttcactcgcatggttcatact
cagttttctacctctattcgcatttttcgttctgattctggtggagagtatttgtctaac
acttttcacaaatttttgacctctgaaggtactcttgcccagctctcatgtcctggtgct
catgctcagaatggtattgctgagcgtaaacatcgccatattatagagaccgctcgcacc
cttctgattgcttcttttgttccttctcatttttggggggaagctgtctccacatctgta
tatctcatcaatagacaaccatcatccaaattgtccggcaagtgccctggggaagtcctc
tttgcacttttacctcaggaaaacaagtcattattaaaccatggtcatggacagtggcaa
gatccagtaaagaatgaaactgcaaaccaggatagtcagcaacaggaacagacatatcta
cataggagtgatcagccatcaagacctgaaatggtttctcaaggttctgataataaacac
cttccctctaatacaccaaaagaatgtgagttactgaaggtaaagcaagagcctggaaac
acatcccaacaaggtattgttgctcagcagcagcctttgcagcaaatgaagagtgaacaa
acaccagttgttgctcagcagcagcctatgcagcaaatgaagagtgaacaaacaccaatt
cttgctcagcagcagcctatgcagcaaatgaagagtcaacaaacaccacacacaaaccaa
acaaatggtgcaactacgacagcaaaagccccagttgtcacatttcacatgctactacct
attttgagacagtacattgacaaagaaaaggatatgcaagttcagtccattttcgccaag
ttgcggaaaaatgaggtcagcaaggaacacttcttaaaagttgtaaggaatattgttggc
gataaggtgcttaagttagcgatttcagaatatcaaatgcagcacactgctcaggcacag
cgaaattctcagacaaatccaagcagctattctttattaagtcaagtttctggtcagcag
actgttcccaggggttctatgacagatgagcaggaggcagatccaggggctcacaccatc
cctacgaaacaagctattgacagcctaagaccacctcaatttcggccttcctcgtctggc
caaatgcagagtattaggggtttttcaccttcacaaagcaatgtgcataaggctaatgaa
acaggaaacatgtcagatgggaaaggagtgcatgtgctacaaacccgcccacccaataac
ttacctccggtgcaaacaatgcagcatcatgtgcagcatccacaaacatcctcaccaatg
tttgggacaaatagtattcatgcacgcccatttccacgaccagttggaagtccagctgca
tcatttagaccacaaatgacagattccaatcaaagagcacagttggtccagggagctgcg
accacagtatctgggagtgtgccaacacaatctatagtgcctggaaatgcgccaactaat
caacctacatggcaacaatcagcaaacaaggagcagaaaactaattctttcgctccaaca
gcaccgaataaggaaactattagccaaaactctgaatcttcacagaattcttttgttgca
atgcatgcaaaacaagtcaatcaatccatgggctcttcaaaaggtggcagaggcatggaa
aaccagtcaaaattaagtgcttctaagtcttcgaccacaactagcttaagtcagactcag
tctcatggcactcaagcagagcctaaattgcaggtccaatcttctgtgcaagcacctccc
gcagcagctaaaacacctcagaggaaggcatctggacagaagaagcctctggaagcatta
ggctcttctcctccaccatctagcaaaaagcaaaagacatccggaggtttccatgaacaa
agcattgaccagcttaatgatgtcactgcagttagtggtgttaatctgagggaagaagag
gaacaacttttctctgctccgaaggatgagactcgagtttccgaagctgctcggagagtt
gttcaactagaagaagaaaagctcattctacagaagggacccctgacaaagaaattagca
gaaatcatgaggaaatgtaatttaaaggtcattggcactgatgttgaacgttgtctatca
atgtgcgtcgaggagagattacgaggatttataagcaatataataaggttctctaaacag
agggttgatgttgaaaagtcaaggcatcgcttttatccgttatcctcagatgttcgcagt
catattatgagggtgaaccgagaagctaaagaacagtgggacaaaaagcaagctgaagat
gctgaaaggataaggaaacaaaatgatggagatggcaatacaaatattgatctagaaaaa
gacaagaacgagacccgtgcctcgtcaaagcatgcaaagtacaaggaggatgatgataag
atgagaaccacagctgcaaatgttgctgcgcgggttgctgctggaggagatgacatgctg
tcaaagtggcaattgctagctgaacgaaataaacagagaagtgagggaggtgacggttcc
tcaggctctgtacaaggtaacatgttgcaacacaagccatcaccaaaatctgggaaaggc
tcgagggaggaacatgaaaatgaaaagaggggctactccacaatgcttggatctggtggt
gttagaaggtcatcactaacaaaagtggcacggagggtttcagtgaaagatgtgatagca
gcactggaacgagaacctcagatgtcaaaatccttactacttttcgagctatacgggaga
ccatcgacagaacctgctgcaaagtaa
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