Panicum virgatum (switchgrass): 120652004
Help
Entry
120652004 CDS
T07260
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120652004
04120 Ubiquitin mediated proteolysis
120652004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120652004
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120652004
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
U-box type E3
120652004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
120652004
NCBI-ProteinID:
XP_039785619
LinkDB
All DBs
Position
9K:complement(50352131..50359551)
Genome browser
AA seq
1029 aa
AA seq
DB search
MASPSPASARPQRSPDEVEDIILRKILLVSLTPPANPSPAVAYLELTAAELLSESRPLLA
LRDAAERLLIDRLSLLDPPAASQPPFTFLAAAFGRAADEARKISTIRDAGLRARLAGSIA
HLRGLILSYARIVAGNPDTFPSPPAAPHPAAELLVFLLAEAADALDPTPAPGAPPPPGFI
DEFFGGADYESIEPAMGELYELLRRSVEKVSALGDFQRPLRVLRRLVGIPNCAKALVNHP
KWIPKNQIMLIGEGRVMELSSVLGAFFHVSAIRDREFASKPDVGQQCFSEASSRRPADLL
SSFTTIKSVMNGLYDGLKDVLLILLKNLDTREKVLEYIAEVINKNASRSGMQVDPLKCAS
SGMFVNLSAVMLRLCEPFLDNMESKKDKIDVNYLFCNNRIDFKDLTAINASSDEVSSWIE
SIKNEHDQNSASGEARLMESQEATSSGKNSTSLVRCAKKENFSFICECFFMTARVLNLGL
MKAISDFKHISQQLARFEDDLESNRAMRDQGGGSPQLEQDINRLEKIVEILTQDKFCYEA
QILRDGAFLQRALSFYRLMILWSVDLVGGFKMPLPSQCPKKFSCIPEHFLDDAMDLLVLT
SRIPKALESFVLDDFLSFIIMFMGSTSYIKNPYLRAKMVEVLNCWMPQRSGLSSTASLFE
GHQLCLDYLVRNLLKLYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWDVPSHRNAWRQIA
KEEEKGVYLNFLNFLINDSIYLLDESLNKILELKEIEAEMANTVEWERRPPQEREERLRV
FHQWENIVRFDMKLANEDVGMLAFTSEQIPAPFLLPEMVERVASMLNYFLLQLAGPQRKS
LTVKDPEKYEFKPKQLLKQIATIYVHISRGDKEAVFPAAISKDGRAYKDQLFASAANILW
RIGGDPQIIKEFMQLAGKAKAAASEAMDAEAILGDIPDEFLDPIQYTLMKDPVILPSSKV
TIDRPVIIRHLLSDSTDPFNRSHLTQDMLVPNTELKLQIEEFVRSQQSRKRTAAESEIGE
PDGTADMVE
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccccgtcgccggcttcggcgcggccgcagcgctcgcccgacgaggtggaggac
atcatcctccgcaagatcctgctcgtctccctcacgcccccggccaaccccagccccgcc
gtcgcctacctcgagctcaccgccgccgagctcctctccgagtctcgcccgctcctcgcc
ctgcgcgacgccgccgagcgcctcctcatcgaccgcctctcgctcctggacccgcccgcc
gcgtcccagccccccttcaccttcctcgccgccgccttcgggcgcgccgccgacgaggcc
cgcaagatctccaccatccgcgacgcgggcctccgggcgaggctcgcgggctccatcgcg
cacctccgggggctcatcctctcctacgcgcgcatcgtcgccgggaaccccgacacattc
ccctccccgcccgccgcgccccaccccgccgccgagctcctcgtcttcctgctcgctgag
gccgccgacgcgctcgaccccaccccggcgcccggcgcaccgccgcccccgggcttcatc
gacgagttcttcggcggcgcagactacgagtccatcgagccggcaatgggggagctgtac
gagctcctcaggcggagcgttgagaaggtctcggcgcttggcgatttccagcgcccgctg
cgggtgcttaggcgcctcgtggggatccccaactgtgccaaggctctggtgaaccatccc
aagtggataccaaaaaatcagatcatgctcattggggaaggaagggtcatggagctctcc
agtgtgcttggggccttcttccacgttagcgccatccgtgaccgcgagtttgccagcaag
cctgatgtcgggcaacagtgtttctcagaggcatcttcacggcgaccagctgatttgttg
tcatctttcacaacaatcaagagtgtcatgaatggcttgtatgacggccttaaggatgtt
cttctaatcctccttaaaaacttggatactcgagaaaaggttcttgagtatatagcagaa
gtgataaataaaaatgcttccagatctggcatgcaggtagaccctttaaaatgcgcgagc
tcaggtatgtttgtgaatcttagtgctgtgatgctccgcctatgtgagccttttttggat
aacatggagtcaaagaaggacaagattgatgtcaattacctcttctgcaacaatagaatt
gatttcaaagatttgacagcaataaatgcttcttcagatgaagtctcatcttggatagag
agcataaagaatgagcatgatcaaaatagtgccagtggagaggcccgcttaatggaatca
caggaagccacaagctcgggcaaaaatagcacatctttagttaggtgcgcaaaaaaggag
aatttctcttttatttgcgaatgtttcttcatgactgcaagggtacttaatctggggttg
atgaaagctatatcagacttcaaacatatttctcagcaacttgcgagatttgaagatgac
ttggaatcaaatagagcaatgagagatcaaggagggggctcaccgcagctggagcaagat
ataaatcgcttggagaagatcgtcgagattttaacacaggacaaattctgttatgaagct
cagatactacgagatggtgcattccttcaacgagcattatctttctacagattgatgata
ctgtggtcagtagacctagttggtggattcaagatgcctttgccatcacagtgccccaag
aaattttcttgtattccagaacattttcttgatgatgcaatggatttacttgttctgacc
tctagaattccaaaggcgttggaaagctttgtattggatgactttctcagtttcatcatt
atgtttatgggaagcacatcttacattaagaatccctacctaagagcaaagatggttgaa
gttttgaattgctggatgccgcaaagaagtggcttgagttctacagcctcactatttgag
gggcaccaactatgtcttgactaccttgtcagaaatcttctaaagctttatgtggatatt
gaattcactggctcccatacacaattttttgacaagtttaacattcgacataatattgct
gaacttctggagtatttatgggatgttccaagtcatcgaaatgcatggagacaaattgct
aaagaggaggagaagggtgtatacttaaattttctgaacttccttatcaatgatagcatc
tatcttcttgacgagagcttgaacaaaattctcgaactgaaagaaatagaggcagaaatg
gctaacaccgttgagtgggagcgcaggccccctcaagaaagagaggagcggctgcgtgta
tttcatcagtgggagaatattgttcgatttgacatgaagctggccaacgaggatgttggg
atgcttgcatttacttcagaacaaattccagcacctttccttctccctgaaatggtggaa
agggttgcgagcatgcttaattacttcctcttgcaacttgctggtccccagaggaaatct
ttgacggtaaaggatccagagaagtatgagttcaagccaaagcagctgttgaaacagatt
gctaccatctatgtccatatctcaaggggtgataaggaagctgtcttcccagctgcaatc
tcaaaagatggtagagcttacaaggaccagttgtttgctagcgcagctaatattctgtgg
aggattgggggtgatccccaaattataaaggagtttatgcaacttgctggtaaggcaaaa
gctgctgcttctgaggctatggatgctgaggccatccttggggacataccggatgaattt
ctcgatccaattcagtatactctgatgaaagatcctgtgatcctcccatcatcaaaggtc
acaatagatcggcccgttataatcaggcatctgctgagtgattcgacggatccatttaac
cgatcccacctcactcaagacatgctggtaccaaatacagagctgaagttgcagatagaa
gagtttgtccggtctcagcagtcaagaaagcgaacagctgctgaatcggagattggcgaa
ccggatggcactgctgatatggtagaatga
DBGET
integrated database retrieval system
