Panicum virgatum (switchgrass): 120652126
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Entry
120652126 CDS
T07260
Name
(RefSeq) pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120652126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120652126
Spliceosome [BR:
pvir03041
]
Complex C
Other components
Step II factors
120652126
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
eIF2A
Motif
Other DBs
NCBI-GeneID:
120652126
NCBI-ProteinID:
XP_039785773
LinkDB
All DBs
Position
9K:complement(51842918..51846135)
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AA seq
572 aa
AA seq
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MDLLQSSYAPDDASSPEESAAASSPDSSPLRLPSKSAAPAVDDTALALSAAASASRPLDP
SLHLVAFNPTADQLWAPIVGPQHPHAPISSASGNRNHKLGHVEDAAVLPFLFDEQYNTFH
RFGYAADPSGLHIVGDAQPQAPEPDTVYNLAPSEHKRRRLLAKADNQDETLPPEAKNPAS
EEWILHNKQSPWAGKKEAPPAELTEEQKQYAEAHAAKKAEKEARGEGKGERAEVVVKSTF
HGKEERDYQGRSWITPPKDAKATNDHCYIPKRCVYEWVGHTKGVSAIRFFPKYGHLLLSA
SMDCKIKIWDVLGSRTCMRTYMGHSKAVRDISFSNDGTKFLSAGYDRNIQYWDTETGQVI
STFSTGKVPYVVKLNPDEDKQHILLAGMSDKKIVQWDMKSGQITQEYDQHLGAVNTITFV
DNNRRFVTSSDDKSLRVWEFGIPVVIKYISEAHMHSMPSIALHPNSNWLAAQSLDNQILI
YSTKERFQLNKKKQFAGHIVAGYACQVNFSPDGRFVMSGDGEGSCWFWDWKSCRRFKTLK
CHNGVCIGCEWHPLETSKVATCGWDGVIKYWD
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggatctcctccagtcctcgtacgcgccggacgacgcctcctcgccggaggagtcggcg
gccgcttcctcgccggactcctccccgctccgcctcccctccaagtccgccgcccccgcc
gtcgacgacaccgcgctcgcgctctccgccgccgcctccgcctcccgcccgctcgacccc
tcgctccatctcgtcgccttcaaccccaccgccgaccagctctgggcgcccatcgtcggg
ccccagcacccccacgcccccatctcctccgcctccggcaaccgcaaccacaagctcggc
cacgtcgaggacgccgcggtgctgcccttcctcttcgacgagcagtacaacaccttccac
aggttcggctacgccgccgatccctccggcctccacatcgttggcgacgcgcagccgcag
gcgcccgagcccgacaccgtctacaacctcgccccctccgagcacaagcgccgccgcctc
ctggccaaggcggacaaccaggacgagacgctgccccccgaggccaaaaaccccgcatcc
gaggagtggatcctccacaacaagcagagcccctgggcgggcaagaaggaagcgccgccc
gctgagctcaccgaggagcagaagcagtatgccgaggcccacgcagccaagaaggccgag
aaggaggctcgcggcgaagggaagggcgagagggcagaggtcgtggtcaagagcaccttc
cacgggaaggaggagagagactaccagggacggtcctggatcacgccgcccaaggatgcc
aaggccaccaacgaccactgctacattcccaagaggtgtgtgtatgagtgggttgggcac
accaagggggtttcagccatcagattcttccccaagtatgggcatctgctactatctgcg
agtatggattgtaagattaagatctgggacgtgctcgggtcgcggacatgtatgcgcaca
tatatgggtcactcaaaggccgtaagggatatatccttctccaatgatgggaccaaattc
ttgagtgctgggtatgacaggaatatacagtactgggatactgagacagggcaggtgatc
tcgaccttctcaactgggaaggtcccatatgttgtgaagctgaatcctgatgaggataaa
cagcatattctccttgctggaatgagcgacaagaagattgtgcaatgggatatgaaatca
gggcagatcacgcaagagtatgatcagcatttaggggctgtgaacaccataacttttgtc
gataacaacaggaggtttgtgacgtcaagtgatgacaaatctcttcgtgtctgggagttt
ggcatccctgtggtgatcaagtatataagtgaggcgcacatgcactcaatgccatcaatt
gccctgcacccaaactccaactggctggcagcacagagcttggacaatcaaatactgata
tacagcaccaaggagaggttccagctcaataagaagaagcaatttgctggccacattgta
gcaggttatgcttgtcaggtgaacttctcacctgatgggagatttgtgatgtcaggtgat
ggtgaaggtagttgctggttctgggattggaaaagctgcaggaggtttaagacattgaag
tgccacaatggggtttgcattggatgcgagtggcatccgttggaaactagcaaggttgcg
acatgcggatgggatggtgtaattaaatactgggattga
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