Panicum virgatum (switchgrass): 120652328
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Entry
120652328 CDS
T07260
Name
(RefSeq) beta-adaptin-like protein C
KO
K12392
AP-1 complex subunit beta-1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
120652328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120652328
Membrane trafficking [BR:
pvir04131
]
Endosome - Golgi transport
Others
AP-1 complex
120652328
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Adaptin_N
Cnd1
B2-adapt-app_C
HEAT_2
HEAT
Alpha_adaptinC2
PDS5
HEAT_EZ
Atx10homo_assoc
HEAT_spiro
Arm_2
Coatomer_g_Cpla
Motif
Other DBs
NCBI-GeneID:
120652328
NCBI-ProteinID:
XP_039786047
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Position
9K:54085919..54093129
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AA seq
898 aa
AA seq
DB search
MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM
QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI
TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLEALKDLISDNNPMVVA
NAVAALAEIQDSSVRPIFEITSHTLSKLLTALNECTEWGQVFILDSLSRYKAADAREAEN
IVERVTPRLQHANCAVVLSAVKIILLQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQY
VALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE
YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR
YPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLETFPEEPALV
QLQLLTATVKLFLKKPTEGPQQMIQAVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKD
VVLAEKPVISDDSNQLDSSLLDELLANISTLSSVYHKPPESFVSHVKAAPRPDDEEFPDT
AETGYSESPSQGVDGASPSSSVGTSSNVPVKQPAAGSPPAPAAMPDLLGDLMGMDNAIVP
VDEPAAPSGPPLPVLLPSTTGQGLQISAQPTRRDGQIYYDISFENGTQGVLDGFMIQFNK
NTFGLAAGEALKVPPLQPGASARTLLQMVPFQNISPGAPNSLLQVAVKNNQQPVWYFNDK
IPLHVFFVEDGKMERDSFLEAWKSLPDDHEFTKEFPGSVISSVDATVERLAAANVFFIAK
RKNANMDVLYLSAKMPRGIPFLIEITAVVGVPGVKCAVKTPNKEMVPLFFEAMEAHTK
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggcacgactcgaaatacttctccaccaccaagaagggggagatccccgagctc
aaggaggagctcaactcccagtacaaggacaagagaaaggatgctgttaagaaagtgatt
gctgctatgacagttggaaaagatgtctcatcgttgttcacagatgtcgtgaactgcatg
cagactgagaatttggagctcaagaaattagtatatttgtatcttatcaactatgctaag
agtcaacctgatcttgccatacttgctgtgaacacatttgttaaggactcgcaagaccca
aatccattgattcgtgctctggctgttaggacaatgggttgtattcgtgtggacaaaatt
acagagtatctttgtgatccacttcaaagatgcctcaaggatgacgatccctatgtgcgg
aagactgcagctatttgtgttgctaagctttatgatataaacgctgagctagtggaggac
agaggatttttagaggcccttaaggatttaatatctgataataatcctatggttgttgca
aatgctgttgctgctctggcagagatccaagacagtagtgttcggccaatctttgaaatt
accagccatacactgtcaaagcttctgacagctctgaatgaatgcacggagtggggccaa
gtcttcattttggattctttgtcaagatacaaagcagcagatgccagggaagcagaaaac
atagtggagcgagttacaccccgtctccaacatgcaaattgtgcggttgttctttctgct
gtcaagataatccttctacaaatggagctcattacaagcacggatgtagtcaggaatctc
tgtaagaaaatggcgcctcctcttgttactcttctgtcagcggagcctgaaattcagtat
gtggctttgaggaacattaatttgatagttcaaaagaggcctacaatacttgctcatgaa
attaaggtgttcttttgcaagtacaatgatcctatatatgttaagatggaaaagctggag
atcatgataaagcttgcctcagatcgaaacatagatcaggtgctcttggagttcaaggag
tatgccacagaggttgatgttgactttgtgcggaaagctgttcgtgctattgggagatgt
gcaattaaattggagcgagctgctgaaaggtgcatcagcgttttgcttgagctgattaag
ataaaagttaactatgttgttcaggaagctataattgttatcaaagacatcttcagacgc
taccctaacacgtatgagtctatcattgcgacactttgtgaaagcctggacactttagat
gaaccagaggccaaggcatcaatgatttggataattggagaatatgctgaaagaattgac
aatgctgatgaacttcttgagagcttcttggaaacattccctgaagaaccagcattggtt
caactgcagctgctaactgctactgttaagttgtttcttaagaagccaactgaggggcca
cagcagatgatacaggctgttctcaataatgcaacagttgaaacagacaatcctgatttg
agggatcgagcttacatatactggcgacttctttctacggatcctgaggctgcaaaagat
gttgttttggcggagaaacctgtgattagtgatgactccaaccagcttgactcatcactt
cttgatgagctgctagcaaacatttctaccctttcgtcagtttatcacaagcctccagaa
tcatttgtcagccatgttaaggcagcacctaggccggatgatgaggaatttccagataca
gctgaaacagggtattcagagtcaccatcacagggagttgatggggcatcaccgtcctca
agtgtcggcacttcttctaatgtacctgtgaaacagcccgcagctggatccccgcctgct
cctgctgcaatgccagaccttttaggtgatcttatgggcatggataatgctattgtccct
gtcgatgaacctgcagctccttctggccctccgctacctgttttgttgccttcgactact
ggccaagggctgcagattagtgcacaaccaacacgacgtgatggccagatatattatgat
atatccttcgagaatggaacccagggtgtcctagatggatttatgattcagtttaacaag
aacacatttggtcttgctgctggcgaagcacttaaggttcctccactacaaccaggagca
tcagcaaggacacttcttcaaatggtgccgttccagaatatctcccctggtgcaccaaac
tcgctactgcaggtggctgtgaaaaataaccagcagccagtgtggtacttcaatgacaaa
attccgctgcatgttttcttcgttgaagatggaaagatggagcgagacagttttctcgag
gcctggaaatctttacctgatgaccacgagtttacaaaagaattccctggctcggtcatc
agcagcgtagatgcaactgtcgaacgccttgcagcagcaaatgtgttctttatagccaaa
aggaaaaatgcaaacatggatgttctgtatctatcggccaagatgccccgtggaatcccc
ttccttatagagattacagcagtggtgggtgttcctggtgtaaagtgtgcagtcaaaacg
ccgaacaaggagatggtccctctattctttgaagctatggaggctcataccaagtga
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