Panicum virgatum (switchgrass): 120652332
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Entry
120652332 CDS
T07260
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120652332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120652332
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
120652332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
NBCH_WD40
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_DCAF4
WDR90_beta-prop_4th
PRP4
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_WDR75_2nd
eIF2A
WD_LRWD1
Beta-prop_Nup120_160
WD40_like
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
120652332
NCBI-ProteinID:
XP_039786052
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Position
9K:complement(54143697..54147378)
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AA seq
524 aa
AA seq
DB search
MENPRPQPPAPTPPMAPLPVPAHPPIAPIPVPPPRAPIPAAASVASTSASAAGGGSGDEV
EYEVSDDHRAARERHERAVQELLQRRRAYAMAVPTNDSAVRARLRRLGEPITLFGEREME
RRDRLRALMVRLEADGQVDRLLRAQEDDQAARVGEEEEEEQIQYPFFTEGTQDLLNARVD
IALYSLPRAKARIERAKRRHEDPDEDPEAEADLVVKQAGEFVLDCSEIGDDRPLTGCSFS
RDASLLATSSWSGLIKVWSMPQITKVATLKGHTERATDVAFSPADDCLATASADKTAKLW
KPDGSLLMSFDGHLDRLARLAFHPSGKYLGTASFDKTWRLWDINTGKELLLQEGHSRSVY
GVGFHPDGSLVASCGLDAYARVWDLRSGRLFFTLQGHVKPVLGVSFSPNGYLVATGSEDN
FCRIWDLRKKQMLYSIPAHKSLISHVKFEPQEGYYLATSSYDTKAALWSARDCKPIKSLV
GHESKVTSLDISGDGQQIVTVAHDRTIKIWSCRSSTQDNAMELD
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccccaggccgcagcccccggcacccacccctcccatggctccgctccccgtt
cctgcccacccgcccatcgcccccatccccgtccctccgcctcgcgcgcccatccccgcc
gccgcctccgtggcctccacctccgcctccgccgcggggggtgggagcggcgacgaggtc
gagtatgaggtctccgacgaccaccgcgccgcccgggaacgccacgagcgcgcggtgcag
gagctcctccagcggcgccgcgcgtacgccatggccgtgcccaccaacgactccgccgtg
cgggcccgcctccgccgcctcggtgagcccatcacgctcttcggcgagcgcgagatggag
cgccgcgaccgcctgcgggccctcatggtgcgactcgaggccgatggccaggtcgaccgc
ctcctccgcgcacaggaggacgaccaggccgcgcgcgtcggcgaggaggaagaggaggag
cagatccagtaccccttcttcaccgagggcacgcaggacctgctcaatgcgcgcgtcgac
attgcactgtactcgctgccccgtgccaaagccaggatcgagagggccaagcgccgccac
gaagaccccgatgaggacccggaggcagaggctgaccttgtcgttaagcaggctggggag
tttgtgcttgattgcagcgagattggagatgatcgcccgctcactggatgctccttctct
cgggatgcatcactgcttgccacaagttcctggagtggattaatcaaagtatggagcatg
ccacaaataactaaagttgcaaccctgaaaggtcatacagaacgggcaacagatgttgcc
ttttctccagctgatgactgcctagcaacagcttcagctgataaaactgcaaagctatgg
aaaccagatgggtcacttctaatgtcctttgatggtcaccttgatcgtcttgctcgcctt
gcttttcacccatctggaaagtaccttggtaccgctagctttgacaagacttggagactg
tgggacatcaatactggaaaggaactgctgcttcaagaggggcacagcagaagtgtttat
ggagttggctttcacccagatggttctttggtggcatcttgcggtcttgatgcgtatgct
cgagtgtgggatctgagatcgggaaggttgttcttcacccttcaagggcacgtgaaacct
gtcttaggagtcagcttctctcctaatggttatctggtagcaactggaagtgaagacaat
ttctgtcgaatatgggatctgaggaaaaagcaaatgttgtattctataccagctcataaa
agtctaatttcacatgtgaaatttgaaccccaagaaggatattatttagcaacatcttca
tatgacactaaagcagctctctggtcagctcgggattgcaaaccaatcaaaagtttggtg
ggccacgagtcgaaggtgacgagtttggatattagtggagatggacagcagattgtgact
gtggcgcatgatcgtacaataaagatttggtcatgcagaagcagcactcaggataatgcg
atggaattggactga
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