Panicum virgatum (switchgrass): 120652343
Help
Entry
120652343 CDS
T07260
Name
(RefSeq) SNW/SKI-interacting protein A
KO
K06063
SNW domain-containing protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120652343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120652343
Spliceosome [BR:
pvir03041
]
Complex B
Other components
Prp19-related factors
120652343
Complex C
120652343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SKIP_SNW
Motif
Other DBs
NCBI-GeneID:
120652343
NCBI-ProteinID:
XP_039786064
LinkDB
All DBs
Position
9K:54254759..54257331
Genome browser
AA seq
606 aa
AA seq
DB search
MATLKDLLPAPKTSASTFYDHSSDPWFKERYGGESAQASAASRPAGAARTIPPYGKRAGF
VPRRPEDFGDGGAFPEIHVAQYPLGMGRRDDKGGSKILALTVDAHGSVAFDAVVKQGENA
GKIVYSKHSDLVPKIATSDSQAPDDDEEEQKQIEESTERTKAALEKVVNVRLSAAQPKNV
PTHDSESKFIKYKPSQQSAAFNSGAKERIIRMSEMAVDPLEPPKFKHKRVPRASGSPPVP
VMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLS
EALYVAEQKAREAVQMRSKVQRELMLKEKERKEQELRALAQKARMERTGGPPAPSAVPAG
GGRGAVDAIDEDMDMEQPPEPREQRRESREEREARIERDRIREERKRERERERRLEAKDA
AMGKKSKITRDRDRDISEKIALGMASTGGAKGGEVMYDQRLFNQDKGMDSGFATDDQYNI
YSKGLFTAQSTMSTLYRPKKDGDSDVYGDADEQLEKVMKTERFKPDKAFTGASERTGKRD
RPVEFDKQEENDPFGLDQFLTEVKKGKKAVEKIGGGGTMKASGGSSMRDDYDGGSGRSRI
NFERGR
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctaaaggatctcctcccggcgcccaagacgtcggcgtccaccttctacgac
cacagcagcgacccctggttcaaggagcggtacggcggggagtcggcgcaggcgtcggcc
gcatcgaggcccgcgggcgccgccaggaccatccctccgtacgggaagcgggcggggttc
gtgccgcgccggccggaggactttggggatggcggcgccttcccggagatccatgtcgcg
cagtatcctctcggcatgggccgccgcgacgacaagggcgggtccaagatcctcgcgctc
accgtcgatgcgcacgggagcgtcgccttcgacgccgtcgtcaagcagggcgagaacgcc
ggcaagatcgtctactccaagcacagcgacctcgtgccgaagatcgccacgtccgattcg
caggcgccggacgacgacgaggaggagcagaagcagatcgaggagtccacagagcggacg
aaggctgccttggagaaggtcgtcaacgtccgcctctcagctgctcagcccaagaatgtg
ccgacacatgattctgagtccaagtttattaagtataagccgtcacagcaatcagcggcc
ttcaattcaggtgccaaggagaggatcattcggatgtcggagatggcagtggatcctctt
gagccgccgaagttcaagcacaagcgtgtgccccgggcatctgggtcgccacctgtgccg
gtgatgcactcgccaccgcggccagttacagtgaaggatcagcaggattggaagatccca
ccgtgcatttctaactggaaaaatccaaagggttacacgattccacttgataagaggttg
gcggctgatggaagagggctacaggaggtgcaaattaatgacaactttgcaaagctttct
gaagcattgtatgtggcagaacagaaggcgagggaggcagtacagatgcgctccaaggtc
cagagggaactgatgctgaaggagaaggagagaaaggagcaagaactgagggctcttgca
cagaaggctcgcatggagaggactggtggcccacccgcgccatcagctgtgcctgctggt
ggtggcaggggagcagttgatgctatcgatgaagatatggatatggagcaaccacctgaa
ccgcgtgagcagcgcagggagagtagagaagagagggaagcgaggattgagcgtgataga
atccgtgaggagcgcaaacgtgagagggagagagagaggaggctggaagccaaggatgct
gcaatgggcaagaagagtaagatcacaagagacagggatcgtgacatcagtgagaagatt
gctctgggtatggcaagcactggtggtgccaaaggtggtgaggtcatgtatgaccagcgg
ctgttcaaccaggacaaggggatggactccgggtttgccacggatgatcagtacaacatc
tactctaaggggctcttcacagcgcagtctacgatgtctacattgtacagacctaagaag
gacggtgattctgatgtgtatggtgatgcggatgaacagttggagaaggttatgaagact
gagaggttcaagcctgacaaggcttttactggtgcttctgagaggactggcaagcgagac
aggcctgtggagttcgataagcaggaggagaatgatcccttcggtctggatcagttcttg
actgaggtgaagaagggaaagaaagctgtggagaaaatcggaggcggaggcaccatgaag
gcgagtggtgggtcctcaatgagggatgattatgatggaggatctgggaggtcccgcatt
aattttgaaagggggcgttga
DBGET
integrated database retrieval system