Panicum virgatum (switchgrass): 120652346
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Entry
120652346 CDS
T07260
Name
(RefSeq) chromatin-remodeling ATPase INO80-like
KO
K11665
chromatin-remodeling ATPase INO80 [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120652346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120652346
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
120652346
INO80 complex (yeast)
120652346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DBINO
Helicase_C
ResIII
HDA2-3
DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
120652346
NCBI-ProteinID:
XP_039786069
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All DBs
Position
9K:complement(54273482..54291513)
Genome browser
AA seq
1505 aa
AA seq
DB search
MDARRAPPRGGGANCGGGGLSYSTLFNLEPLLNFRVPVPEDLARYGHSSPNGSASSEGQG
SLLDQYKGINDASHGLHRKRKRHLDGASDDDEADPYSNQITEEHYRTMLSEHVQKYRRSK
LREGAFGSDPPCVANPQIKDRSGGKRTMKHRSDSRNVPTLDEVEASHEYSGIECIKTHGG
FNKLVATLDSTYLDMGDNIRYLVPEGYDKLASSLSMPVSSDIRVEEHFLKGMLDLRTLAA
MLGTDQKFESSNRGGLSEPLPQFESLQERVKVQKFSLQVTEDPFAIPEGAAGRIRRSIIS
EAGNLQVHYVKVLEKGDTYEIIERSLPKKQIIKKEPSVIVKEEAERTYKLWQSLATKSIP
KHHRNFNALVKKRQLDAKRFSDSCQREVKLKVSRSLKLMRCAAIRTRKLARDMLIFWKRV
DKEQYELRKKEEREAAEALKREEELREAKRQQQRLNFLLSQTELYSHFMQNKAGASAPPD
EEDVPDEDGEEDPEEAQLKREAMRAAQHAVSQQKMKTNAFDSEVGRLRQTSESGLPTDDS
CSMDPNKIDLLHPSTMPEKSSVQTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMG
LGKTVQAMAFLAHLAEDKNIWGPFLVVAPASVVNNWAEELIRFCPDLKILPYWGPERMIL
RKNINPKRLYRRDASFHILITNYQILVNEEKLLRRVKWQYMVLDEAQAIKSSSSQRWRTL
LGFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIEGHAEHGGALN
EHQLSRLHAILKPFMLRRVKIDVIAEMTKKKEEIVPCKLSSRQQVFYQAIKNKISLNELL
DGSRGNLNDKKLLSLMNIVMQLRKVCNHPELFERNEGSSYFYFADIPNSLLSPPFGELQD
VHYAGKRNPITFEIPKLVYEGIMRNMEISGNSCGFQSGYLNRLLNIFLPSNIHCSAIPEA
NSSNESVLSSGAFGFTRLSNLSPVEASFLATSSLFERLAFLAMQLNMKYTDESMDAFVDS
EGPKFSQNDATSNRAVARLLLSSTKDKSSLLRTKIGTGPGDCPYEALVLSHHDRLASNIR
LLRSAYAFIPPARAPPVNVWCADRNFANKFTDEMHDPWAKKLILGFARTSEFNGPRKPVG
LHPLIQEVHTEPILEPMLQLPYRIFGSSPPMSNFDPAKMLTDSGKLHTLDMLLRRLRAEG
HRVLLFAQMTKMLDILEDYMNFRKFKYFRLDGSSAISDRRDMVRDFQNRNDVFVFLLSTR
AGGLGINLTAADTVIFYEIDWNPTQDQQAMDRTHRLGQTKEVTVYRLICKDTIEEKILQR
AKQKNAVQELVMKGKPVQDDHLMRQEDVVSLLLDDTQIAHKLKEISMQAKDRQKKRRAKG
IKVDKEGDLTLEDLDDATAEAVDQDNTTNKKKKSSHKKHLKMHDNDNVDKNGEAPSGGDL
TGSGHTENEQIAEPRPKRSKRLMNDMSADKEPAAAADLEKPADEAENLTGHDYDETEEVK
DGTPA
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atggacgctcgccgcgcccccccgcgcggcgggggcgccaactgcggcggcggcgggctc
tcctactccacgctattcaacctcgagcctttgttgaacttcagggttcctgtaccagaa
gatcttgcccgctatgggcatagcagcccgaatgggagtgcaagcagtgaaggtcaaggt
tccttgttggatcagtacaaaggtataaatgatgcttcgcatggcctgcatcggaagaga
aaaaggcatcttgatggtgccagcgatgatgatgaggcagatccctatagtaaccaaata
acagaggaacactaccgtacaatgctcagtgaacatgtccagaagtacaggaggtcaaag
ttaagggagggtgcgtttggttctgatcctccttgtgttgcaaacccccaaataaaagat
agaagtggtggtaaaagaactatgaagcacagaagtgattctaggaatgttccaacattg
gatgaagtagaagcctcacatgagtacagtgggatagaatgtattaaaacccatggtggt
tttaataagcttgtagcgacccttgattccacctacttagatatgggggataatatacgc
tacttagttcccgagggttatgataagttagcatcatcccttagtatgcctgtttcttct
gatatacgtgttgaggaacacttcttgaagggaatgctagatttgcgcaccctagcagca
atgcttggtactgaccaaaagtttgagtcttccaatcgtggtggattatctgaacctctg
ccacagtttgaatctctccaagaaagggtaaaggtgcagaaattttctcttcaagttact
gaggacccctttgcaattccggaaggagcagctgggaggattcggaggtccattatatca
gaagctggaaatttgcaggttcattatgttaaagtcttggaaaaaggagatacatacgag
attatcgagcgtagcttaccgaagaagcaaataataaagaaggaaccttctgtaatcgtg
aaagaagaggcagaaagaacttacaaactatggcagtctcttgctaccaaaagcatcccg
aagcatcacaggaatttcaatgctttggtaaagaaacggcaattagatgcgaagcgcttc
tctgatagttgccaacgggaggtaaagcttaaagtaagccggtcactgaaactgatgaga
tgtgctgcaatacgtacaaggaagctggctagggacatgctgatattctggaaaagagta
gacaaagagcagtatgaattgaggaaaaaggaagaaagagaagccgctgaagctttgaag
cgtgaggaggagctgcgtgaagcaaaaagacagcaacagaggctgaactttctgctttca
caaacagagctttatagtcatttcatgcaaaacaaggctggtgcctcagcaccacctgat
gaggaagatgtccctgatgaagatggggaagaagatcctgaggaagctcaattaaagaga
gaggctatgagagcagctcagcatgccgtctctcaacaaaagatgaagacgaatgcattt
gatagtgaagttgggaggcttcgtcaaacttctgagtctggtcttccaactgatgattca
tgtagcatggatccgaacaagattgatctattgcacccctcaacaatgcctgagaaatca
tctgtgcagacaccagagttgtttaagggtgtattaaaagagtatcagctaaagggcttg
cagtggctggttaattgttatgaacaggggttgaatggcattcttgctgatgagatgggt
cttggcaaaaccgttcaggctatggcattcttggctcatttggctgaggacaaaaatata
tggggcccctttctagtggtagctcctgcatctgttgtgaacaattgggctgaggagttg
attagattctgtcctgacctaaagatacttccttactggggcccagagaggatgattctg
cggaagaatatcaaccccaagcgtctttatcggagagatgctagctttcacattcttatc
acaaactatcagatacttgtgaatgaagagaagcttttgagacgtgttaagtggcaatac
atggtactggatgaggcccaggccataaaaagttcaagcagtcagcgctggaggacgctg
ctgggctttaactgtagaaatcgtttactcctcactgggacaccgatacagaataatatg
gctgagttatgggcacttcttcatttcatcatgcccactctatttgacagccatgaacaa
tttaatgagtggttctcaaagggtattgagggtcatgctgagcatgggggagctttgaat
gaacatcagcttagtcgactgcatgctattttgaagccctttatgctgcgccgggttaag
attgatgtcattgctgaaatgacaaaaaagaaagaagaaattgttccctgcaaattgagt
tctcgtcagcaagtcttctatcaagccataaaaaataaaatatctcttaatgagttgctt
gacggaagtcgcggcaatctaaatgataagaagttacttagcctgatgaatattgtcatg
cagctacggaaggtctgcaatcacccggagcttttcgagcgcaatgaaggaagttcttac
ttttactttgctgatatcccaaactcacttctctctcccccatttggggaattacaagat
gtacattatgccggcaagagaaatccgataacgtttgagattccaaagttagtttatgag
ggaataatgcgcaacatggaaatttctggaaacagctgtggatttcagagtggatatttg
aataggctgcttaatatatttttgcccagcaatatccattgttcagccattccggaagct
aattcatcgaatgagtctgttctatcatctggtgcattcggctttacgcgtttatcaaat
ctgtccccagttgaagcttccttcttggccacttcatcattgtttgagagactagcattt
ttagcaatgcaattgaatatgaagtacactgatgaaagtatggatgcattcgttgattca
gaaggtcccaagttcagtcagaatgatgccacaagcaatcgtgcagttgctcggttgttg
ctttcttctacaaaggacaaatccagtttgcttagaacaaagattggtactggcccaggt
gattgcccatatgaagcactggtgctttctcatcatgacaggcttgcctcaaacataagg
cttcttcgttcagcatatgcttttattccgccagctagagcaccgcctgtaaatgtttgg
tgtgccgatagaaattttgccaacaagttcactgatgagatgcatgatccttgggccaag
aaactgatcctgggatttgctcgtacttctgagttcaatggtcctagaaaaccagttggt
cttcatcctttgatacaagaagtacatactgagcccatcctcgagccaatgctgcagcta
ccttataggatttttgggtcttctccgccgatgagtaattttgatccagctaaaatgctc
accgattctgggaagctccacaccttagatatgctattacggcgccttcgagctgaaggt
catcgtgtgctcctttttgcccagatgactaaaatgttggacatccttgaggattacatg
aatttcagaaaattcaagtacttcagacttgatgggtcttctgcaatctcggaccgtcgt
gacatggtccgagatttccagaataggaatgatgtatttgttttcttgttaagcacaaga
gctggtgggcttggtattaatttgaccgctgctgatacagttattttttacgaaattgac
tggaatccaacacaagaccagcaggcaatggatagaacacacagacttggtcagacaaaa
gaggttactgtgtacagacttatatgcaaagatactattgaggagaaaatattgcaaaga
gcaaagcagaaaaatgcagtgcaagagttggtcatgaaggggaaacctgtccaggatgat
catttgatgagacaagaggatgttgtttcattacttcttgatgacacacagattgcacat
aagttgaaagaaatatccatgcaggcaaaggatcggcaaaagaaaagacgagcaaagggc
atcaaggttgacaaagaaggagatttaacgctcgaggacttggatgatgctactgcagaa
gctgtagatcaagataacacaaccaataaaaagaagaagagctcgcacaagaaacatctg
aagatgcatgataatgacaatgtggacaagaacggagaggccccttcaggaggtgatctt
acggggagtggacacacagaaaatgaacagatcgccgaaccaaggcctaaaagatcaaaa
aggctgatgaacgacatgagtgctgataaggaaccagctgctgctgctgatcttgagaaa
cctgcagatgaagcggaaaatctcacaggacatgattatgatgagacagaagaggtaaaa
gatggcactccagcttaa
DBGET
integrated database retrieval system
