Panicum virgatum (switchgrass): 120652401
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Entry
120652401 CDS
T07260
Name
(RefSeq) serine/arginine-rich-splicing factor SR34-like isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120652401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120652401
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
SR proteins
120652401
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
120652401
NCBI-ProteinID:
XP_039786148
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Position
9K:complement(54877450..54882182)
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AA seq
283 aa
AA seq
DB search
MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFENPRDAED
AIAGRDGYNFDGHRLRVEPAHGGRGNASSYDRSGGFGGGARRGVSKHSEYRVLVSGLPSS
ASWQDLKDHMRKAGDVCFSEVYREGGGTIGIVDYTNYDDMKYAIKKLDDTEFRNAFGRAY
IRVKEYDGKRGRSYSRSRSPSRSYSRSRSPSKSPRARRSASRSRSRSVSSRSRSASKGRS
PSRSPARSKSPNASPANGEAASPKKQSPSRSPSGSRSPDAKPE
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggcgctggagccgcacgatctacgtcgggaacctcccgggcgacatccgggag
agggaggtggaggatctcttctacaagtatgggagaattgttgacattgacttgaaggtt
cccccgaggccacctggttatgcttttgttgagttcgaaaatcctcgtgatgctgaagat
gcaattgctgggcgggatggatacaattttgatggacaccgcctaagagtcgaacccgct
cacggtggtagaggtaatgcttcctcatatgaccgttcaggtggctttggtggtggagca
cgacgtggtgtgtcaaagcactcagagtatcgtgttcttgtcagtggactgccttcttct
gcatcatggcaggatttgaaggatcatatgcggaaggctggtgatgtttgtttctctgaa
gtgtaccgtgaaggcggtggcaccattggaattgtggactacacaaactatgatgacatg
aaatatgctataaagaagctggatgatactgaattcaggaacgcctttgggcgagcttat
ataagggtgaaggaatatgatggcaagcgtggtcgctcctactcacgtagccgaagccca
agtcgtagctacagcagaagcaggagcccgagcaaatcaccaagagctcgccgctcagca
tctagatcccggtcgaggtctgtttcttcccgttcaaggtctgcatcaaaagggcgttct
ccgtcaagatcaccagcaagatccaaatctcctaatgcttctccagcaaatggtgaagca
gcaagccccaagaagcagagcccaagcagaagcccatctggctcacgctctcctgatgcg
aaacctgaataa
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