Panicum virgatum (switchgrass): 120652580
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Entry
120652580 CDS
T07260
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120652580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120652580
03009 Ribosome biogenesis [BR:
pvir03009
]
120652580
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120652580
Spliceosome [BR:
pvir03041
]
Complex A
U2 snRNP components
U2 related factors
120652580
Complex B
120652580
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
120652580
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
90S particles
Helicases
120652580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
ABC_tran
SRP54
nSTAND3
T2SSE
AAA_30
TrwB_AAD_bind
AAA_7
AAA_24
Motif
Other DBs
NCBI-GeneID:
120652580
NCBI-ProteinID:
XP_039786379
LinkDB
All DBs
Position
9K:complement(56812513..56816561)
Genome browser
AA seq
722 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSISAKLGRGATNGAAAAAGGANPTVNRWNGRPYSARYFEILE
KRRTLPVWQQKEEFLRALRDKQTLILVGETGSGKTTQIPQFVLETEGLGNRSMVACTQPR
RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKY
KVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSGAPLMKVPG
RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINN
MGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGIV
YVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNEDL
QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGN
LTQLGEMMSEFPLDPQMSKMLAISPKYNCSNEILSISAMLSVPNCFLRPREAQKAADEAK
ARFGHIDGDHLTLLNVYHAYKQNNEDPQWCYENFINARALKSADNVRQQLVRIMTRFNLK
MCSTDFNSREYYVNIRKALLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWV
IYNEYVLTTRNFIRTVTDIRGEWLIDIAPHYYDLSNFPSCEAKRVLERLYNKRERERATN
RG
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcggaaggtgagcctcttcgacgtggtcgacgagacctccatc
tccgccaagctcggccgcggcgccaccaacggcgccgccgccgccgcgggcggggccaac
cccaccgtcaaccggtggaacgggcggccatactcggcgcggtattttgagatcctcgag
aagcgacgcacgctccccgtgtggcagcagaaggaggagttcctccgcgccctccgcgac
aaacagaccctcatccttgtcggcgaaacgggaagcggaaagaccactcagatcccccaa
ttcgtacttgagactgaaggcctgggtaaccgctcaatggttgcctgcactcagccgcgg
agggttgcagcaatgtcagtctccaggcgtgtggctgaggaaatggatgttactattggg
gaggaagtgggatacagcatccgttttgaggattgcagcagccacaaaactgttctcaaa
tatttgacagatggtatgcttctgagagaagcaatggcagacccacttttagagaagtac
aaggtgattgttcttgatgaggctcacgagagaacattggcaacagatgttctgtttggg
cttctgaaggaggttctaaaaaatagaccggatttgaagcttgtcgttatgagtgctacc
cttgaagcagagaaattccagggttactttagtggggcaccattgatgaaggtaccaggg
agacttcacccggttgaaatcttctatactcaagaaccagaaagggactacctagaggct
gctatcaggacagttgtgcaaatacacatgtgtgaacctgctggtgatatccttgtattc
cttacgggagaagaggagattgaagatgcctgtcgtaaaattaataaggaaattaataac
atgggagatcaggttggcccagttaaagttgtgcctttgtattctacgctgcctccagcc
atgcagcagaagatttttgaacctgctcctgccccattgaaggaaggaggccctcctggg
agaaaaattgttgtgtccacaaacattgctgagacgtccttaactatagatggtatagtt
tatgtgatagacccagggttttccaaacagaaagtttacaacccaaggataagggtggaa
tccctcctggtgtcaccaatttccaaggcaagtgctcatcagagagctggtcgtgctgga
agaacgcagcctggaaagtgcttcaggctatacactgagaagagttttaacgaggatttg
caaccacaaacctacccagaaattcttaggtcaaacctggcaaatacagttcttaccttg
aagaaacttggaattgatgatttagtacattttgactttatggaccctccagcaccggaa
actcttatgagggctttagaagttttgaactacttgggggcacttgatgatgacggtaat
ctaacacagttaggtgaaatgatgagcgagtttcccctggatccacaaatgtcgaagatg
cttgccatcagtccaaagtacaactgttcgaatgagatcctatcaatatctgccatgctt
tcagtacccaattgcttcctccggcctagggaggctcaaaaggctgctgatgaggcgaag
gctcgatttggccatattgatggggaccatctcacgcttctgaatgtataccacgcatac
aagcaaaacaatgaagatccccagtggtgttacgagaactttatcaatgccagagcactt
aagtctgcggacaatgtcagacaacagcttgttcgcatcatgactagattcaatctcaag
atgtgcagcacagacttcaatagccgtgagtactatgtcaatatcaggaaagcactgctc
gcagggtatttcatgcaggttgctcacctggagcgcactggacattacctgactgtaaaa
gacaaccaggtcgtccatcttcatccctcgaactgcatggaccataagccagagtgggtc
atctacaacgaatatgtcctgacgactaggaatttcatccgcacagtcacagatatccgt
ggggaatggctgattgatatcgctccacactactatgatctgagcaactttccatcatgc
gaggcgaagcgtgttctcgagaggctgtataacaagcgggagagggaaagggccacgaac
agaggttga
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integrated database retrieval system
