Panicum virgatum (switchgrass): 120652626
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Entry
120652626 CDS
T07260
Name
(RefSeq) bromodomain and WD repeat-containing protein 3-like
KO
K11797
PH-interacting protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120652626
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120652626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_SCAP
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Bromodomain
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
Beta-prop_EIPR1
Auxin_resp
VPS8_N
Beta-prop_HPS5
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
120652626
NCBI-ProteinID:
XP_039786436
LinkDB
All DBs
Position
9K:57276010..57295126
Genome browser
AA seq
1685 aa
AA seq
DB search
MSFRKHQVSSNAASISLAPLDFPSQEREKVNPLKSVMSADVASMDGVDIDMREIYFLIMH
FLSQGPFKRTFGELCNELLEHQLLPRRYHAWYSRGVFHSGEENDDGISLPLGYAKLAERY
PHIGKDHLVKLLKQLMVSSCHPHNLIGAVSPNAADVPTLLGSNSFSLLASDRQNKETPKM
PSYLRWPHIQADQVHGLGLREIGGFTKHRRAPSVRASCYAIAKPSTLVEKMQIIKRLRGH
QNAVYCATFDRTGRYVITGSDDRLVKIWAMETAFCLASCRGHEGDITDLAVSANNAVVAS
SSNDFIIRVWRMPDGMPVSVLKGHTGAVTAIAFSPRPGAAFQLLSSSDDGTCRIWDARYS
QQPPRIYTPKPPDVAPGKSVDASSSAVQVQPTNHQILCCAFNANGTVFVTGSSDTFARVW
NACKSSSEEHNQPNHEMDLLSGHENDVNYVQFSGCAVASRSFSSDSSHISKEENNLKFRN
SWFTHNIVTCSRDGSAIIWVPRSRRSHGRVGRWTRAYHLKVPPPPMAPQPPRGGPRQRYQ
PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLIGHKESTFVLDVHPFNPRI
AMSAGYDGKTIIWDIWEGKPVQIYETGHFKLVDGKFSPDGTSLILSDEIGQIFIIGTGQG
ESQKDAKYDQFFLGDYRPLIRDTNGGVIDQETQLIPHRRNMQDFLCDAGMMPYPEPFQSM
YQKRRLGTLGIEWRHPSVNFAVGPTYNATTGEYQTIPIIDPDRWEPLPEITDFIELEPEN
EVISDDTDSEYNGMDENSSEGEQEIMSGDSSGTSYSSAEIDADNPNSAAHLRRSRRKKKK
SEAELVTSSGRRVRKKILDEPDTATVSRPHRSRKSRNGRSSKRKRSPKSRGLRPQRRAAR
NALNFFSKIGASTEEDEDDSEGSFSDSELNTDSTDAEQLEHTDPLRFSTEEDVTQPSQFT
DNKGNSGTGRKIVFRIPRRDLKIPFPSGSGKAECSTQDKTVNSLALANHESVEPELTVEH
RHSTVCKAELLADSGLCDGSAVHSNNSIRWGEVKMRSSKRFKYSDRAGGLWSTPNNAASQ
DIEGSGSQEMPHEYGGGIQQSVGENVQEIRPEIILDSIRENHTTDEYNGENFGDKEKITN
NNNAWADGANNTIQVNNTSQPSLKLKIRSRGFADGASLPDKSGSAAEGNIMNAEHGKGSV
RHDDSSINQLRNVDMLNVSKSSQECTDKSIDLHDSKRLLLDSPKTFTAVYKRSKPNNRKK
MDSDEYANEDSTSISNDDGGYQPPEYSPVTAANGRLRRSARKSYAHYGDDTPRDDISQVK
DSYSSYEASTSGRRIVTDMREVMWQSTSKTVGLRSARNKRESSNFPDTHLFGKKHQGPLK
YSWLMLHEHEDSYRYIPQLGDEVMYLWQGHKEYLEGERSSDPCPWKRIKGLKAVELCKIQ
GLDYSSYKGSGESCCKLSIEFIDRASTGFGKTFMITLPELVSYPDFLVERTRYEAAMERN
WTHRDKCKVWWRDEEEQEGGKWWEGRITAVKPKSTDFPDSPWEKFVIQYKKDSSEHPHSP
WELHDGGNLWVPWKHPHINLEIRDKLLSEMEDLQEMSHGNQDRYGVLKLDKVTEKSDFVN
RFPVQFSIEVIKTRLANNYYRTLEAVRHDATVMLVNAESYFSKSAEMTKKIHRLSDWVDQ
TFSSL
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttagaaagcaccaagtttccagtaatgcagcctccataagtttggctcctctg
gattttccaagtcaggaacgtgagaaagttaatcctttgaagtcagtgatgtcagctgat
gttgcatccatggatggtgtggatattgatatgagagaaatttactttctcattatgcat
tttttatctcagggtccatttaaacggacctttggtgaactgtgcaatgaactactggag
catcaacttctccctagaagataccatgcttggtattcgcgtggtgttttccatagtggt
gaagaaaatgatgacggcatatcactacctttgggttatgcaaagttagctgagagatac
ccccacattggtaaagaccacttggtaaagctattaaagcaactgatggttagttcctgt
catccacacaacttgattggagcagtttctccaaatgctgctgatgttccaacacttctt
ggctccaactccttttcacttcttgcatctgacaggcaaaataaggaaactcccaagatg
ccaagctatcttcgttggccacacatacaggctgatcaagttcatggtttaggtttgaga
gagattggtggttttactaagcaccgtcgagctccctctgtacgtgcatcgtgctatgct
attgcaaagccatctacccttgttgaaaagatgcaaatcataaaaagattgaggggacat
caaaatgctgtgtattgtgctacctttgatcgcacggggcgttatgttatcactggttct
gatgaccgccttgttaaaatatgggcaatggaaacagctttttgtctggctagctgccgg
ggccatgaaggtgatattactgatcttgctgtcagtgccaataatgctgtggtggcgtct
tcatccaatgatttcattattagagtgtggcgtatgcctgatggaatgccagtctcagtg
ctcaaggggcacacgggagcagttactgctattgcatttagtccaaggccaggtgctgct
ttccagctgttgtcgtcatcagatgatgggacatgcaggatttgggatgccagatactcc
caacaacctccacgaatatatacaccaaagcctccagatgttgcccctgggaagagcgtt
gatgcatcttcaagcgctgttcaagtccagccaacaaatcaccaaatcctatgttgtgca
ttcaatgctaatggaactgtgtttgtcactggcagctcagacacctttgctagggtatgg
aatgcttgcaagagttcttctgaggaacacaaccaaccaaatcatgagatggatctatta
tctgggcatgaaaacgatgtaaactatgtgcagtttagtggatgtgcagtggcatcaaga
tcattttcatctgattccagtcatatctctaaggaagaaaataatctgaagttcagaaat
tcctggttcacgcataatattgttacctgctcacgagatggcagtgcaattatatgggtt
ccacgatctcggaggtcacatggaagggttggacgctggacacgtgcttaccatcttaaa
gtccccccacctccaatggctcctcagccacctcgaggtggtcctcgtcaaagataccaa
ccaactcctcgtggtgtcaacatgattgtttggagtctggacaaccgttttgtacttgct
gctatcatggattgcaggatttgtgtatggaatgcttctgatgggagcttggtgcattca
ctgatcggccataaggaatccacatttgttcttgatgtgcatccatttaaccctcgtatt
gctatgagtgctgggtatgatggaaagacgatcatctgggatatatgggaaggaaaaccc
gtgcaaatttatgaaacagggcattttaaactagtcgatgggaagttctctccggatggt
acatcacttattttatcggacgaaattgggcaaatattcattattggtactgggcaagga
gagtcccagaaggacgcaaaatatgaccagttcttccttggagactatcgacccctcatt
cgagacaccaatggaggcgttattgatcaggaaacacagcttataccacataggagaaat
atgcaagacttcttatgcgatgctggtatgatgccatatccagagcccttccagagtatg
taccagaagcgtcggttaggtacacttggtattgagtggcgacatccctctgtgaacttt
gctgttggccccacttacaatgcaaccactggtgaataccaaaccatcccaattattgat
ccggataggtgggaaccacttccagagataacagacttcattgagcttgaaccagaaaat
gaagttatctctgacgatactgattctgagtacaatggcatggatgagaattcaagtgaa
ggagaacaggagattatgagtggtgattcctcgggtacttcatattcaagtgcagaaatt
gatgcggataaccctaatagtgctgctcatctccgccgatcaagaagaaagaagaaaaag
tcggaggctgaacttgttacttcgtctggtcggcgagttaggaaaaagattttggatgag
cctgatacagctacagtatcaaggccacatagaagtaggaagtctaggaatggacgttca
agcaaaaggaaaagatccccaaaatccaggggattgcgtcctcaaagacgtgctgctcgc
aatgcactcaattttttctcaaagataggagcttcaacggaagaggatgaagatgattca
gagggaagtttctcagacagtgaattgaacacagatagtactgatgctgaacagttggaa
cacactgacccactaagatttagcacagaggaagatgttacacaaccttctcaatttacg
gataataagggaaattctggaactggtagaaaaatagtcttcagaataccacgccgtgat
ttgaaaattccatttccttcaggaagtggaaaagcagaatgctccacacaggataaaaca
gttaattctcttgctctagctaatcatgaatcagtagagcccgaactaactgttgaacac
agacattccactgtttgcaaggctgaattactggcagatagtggtctgtgtgatggttct
gctgttcacagtaacaactcaattaggtggggtgaagttaagatgcgatcctcaaagcgt
ttcaagtacagtgatcgagcaggagggttgtggtccactccaaataatgcagcttcacag
gatattgaaggatcaggtagtcaggagatgcctcatgaatatggtggtggaatccagcaa
agtgttggggaaaatgtacaagaaatacgacctgaaataattctagatagcattcgggaa
aaccacactactgatgagtataatggagaaaattttggggacaaagaaaagataactaac
aataataatgcctgggcagatggagcaaataataccatacaagttaacaatacttctcag
ccttccttgaaactgaagatcaggtcaagaggctttgcagatggagcaagtttgcccgac
aaatcaggaagtgcagcagagggaaatatcatgaacgccgagcatggtaaaggttcagta
cggcatgatgattcttcaatcaatcaacttaggaatgtggacatgctcaatgtgtccaaa
agttctcaggaatgcacagataaaagcattgatttacatgattcgaaaaggctgctcttg
gattctccaaagacgttcactgcagtgtacaaaaggtcaaagccaaataacaggaaaaaa
atggattcagatgaatatgcaaacgaggatagtacttctatctcaaacgacgatggtgga
taccaacctccagaatatagtcctgttacagctgcaaacggtagattgagaagaagcgca
aggaagtcatatgcacactatggtgatgacacaccacgggatgatatttctcaagtgaaa
gattcttatagttcctatgaagcttcaactagtggaagacgaattgtcactgatatgcgg
gaagtaatgtggcaatcaacctcaaaaacggttggtttaaggtctgctaggaacaaaaga
gagagtagcaactttcctgatacacatctatttggtaaaaagcaccaggggcccttaaag
tattcatggttaatgttgcacgagcatgaagatagttaccgttatattcctcaactcggt
gatgaggttatgtacttgtggcagggccacaaggaatatcttgaaggagagcgatcatct
gatccttgcccttggaagcggataaaaggccttaaagctgtagaactttgcaaaatacag
ggtcttgattactcctcttacaaaggatctggtgaaagctgctgtaaactatccatcgaa
ttcattgatcgcgcttccactgggtttggcaaaacatttatgatcaccttacctgagcta
gttagctatccagattttcttgtggaaagaacaaggtatgaagctgctatggagcggaat
tggacccacagagataagtgcaaagtttggtggagggatgaagaagaacaggaaggagga
aaatggtgggagggacggattacggcagtaaaacctaaatcaactgatttcccggatagc
ccatgggagaaatttgtcatacagtataagaaggatagttctgagcacccacatagcccc
tgggaacttcatgatggaggcaatttatgggttccatggaaacatccgcatatcaatctt
gagattcgagataaattgttatcagaaatggaagatttacaagaaatgtcgcatgggaat
caggatcgttatggtgttctaaagttagacaaggtcactgaaaagtcggactttgtgaac
aggtttcctgtccaattttccatagaggtgatcaagacaagattagcgaacaattactac
agaactctggaggctgtccgacatgacgccactgtgatgcttgtaaatgcagagtcttac
ttttcaaagagtgctgaaatgaccaaaaagatccacaggctctctgactgggtcgatcaa
accttttcatcattgtag
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integrated database retrieval system
