KEGG   Panicum virgatum (switchgrass): 120652676
Entry
120652676         CDS       T07260                                 
Name
(RefSeq) U2 small nuclear ribonucleoprotein B''
  KO
K11094  U2 small nuclear ribonucleoprotein B''
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120652676
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120652676
Spliceosome [BR:pvir03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    120652676
 Complex B
    120652676
 Complex C
   U2 SnRNP specific factors
    120652676
SSDB
Motif
Pfam: RRM_1 RRM_5 RRM_occluded RRM_PARP14_3 xRRM DUF4523 RRM_YTH1 E1_4HB
Other DBs
NCBI-GeneID: 120652676
NCBI-ProteinID: XP_039786495
LinkDB
Position
9K:57815709..57820915
AA seq 231 aa
MLSGDIPPNQTIYVNNLNEKVKKEELKRSLYALCSQYGRILDVVALKTQKLRGQAWVVFS
EITAATNAFRGLQDFDFYGKKMRVQYAKTKSDCIAKEDGTYAPKEKRKKQEEKAAEKKRR
AEEAQQSGPNASTQSNGTGYQASRLSKVSQEHLPPNNILFIQNLPDQTTSMMLQILFQQY
PGFREVRMIAAKPGIAFVEFEDDSQSHIAMQALQGFKITPENPMAISYAKK
NT seq 696 nt   +upstreamnt  +downstreamnt
atgctgtccggcgacatccccccgaaccagactatctacgtcaacaacctcaacgagaag
gtcaagaaagaagaattgaagaggtcgctttatgccctgtgctcacagtatggaaggata
ctggatgtggtggccttgaaaactcaaaaactgagggggcaagcatgggtggtgtttagc
gaaattacagctgctaccaatgctttccggggattgcaagactttgatttctacggcaaa
aaaatgcgagtccaatatgcaaaaacaaaatctgactgtattgcaaaagaagatggtact
tatgctcctaaggagaaaagaaagaagcaggaggagaaagctgctgagaaaaaacgacga
gcagaagaggcacaacaatctggtcccaatgcttctactcaaagcaatggaactggatac
caagcctctcggctgagcaaggtctctcaagagcatcttcctcccaacaacatcctcttc
atccagaacttgccggaccagaccacaagcatgatgctccagatcctgttccaacagtat
cctggcttccgagaagtccggatgatcgcagccaagccaggcatcgctttcgtggagttt
gaggacgacagccagtcccatatcgcgatgcaggccctccagggcttcaagatcacccca
gagaaccctatggctatatcctacgccaaaaaatga

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