Panicum virgatum (switchgrass): 120652712
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Entry
120652712 CDS
T07260
Name
(RefSeq) transcription factor bHLH140-like
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120652712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120652712
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
120652712
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
120652712
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
120652712
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
120652712
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
120652712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
Macro
HIT
AAA_18
Zeta_toxin
AAA_29
AAA
nSTAND3
AAA_16
KTI12
SMC_N
ABC_tran
NACHT
AAA_19
NB-ARC
AAA_22
AAA_17
AAA_25
AAA_28
AAA_24
MeaB
AAA_30
AAA_5
Motif
Other DBs
NCBI-GeneID:
120652712
NCBI-ProteinID:
XP_039786539
LinkDB
All DBs
Position
9K:complement(58090066..58093967)
Genome browser
AA seq
784 aa
AA seq
DB search
MNPDGGGSSSSPPPPSASRGAGAEAKEEERGGKQVVVVLVGPPGSGKSTFADAVVAGSNA
GRRWVRICQDTIGNGKAGTKIQCLKATSDALKEGKSVLIDRCNLEREQRADFVKLGSTLH
VDVHAVALDLPAKVCISRAVSRKGHEGNLQGGKAALVVNRMLQKKETPLLTEGFSRIMSC
NDDGDIKKAVDLYNALGPSDSLPSGIFCQKSKGPVQVGIMKFLKKGDTSTVEKSSGPKIT
LSETKPEQQKPLPKHEKVEEGMSCPMEIEKGLNDKNENEEHAKECDSGDVDSCTLAFPSI
STADFQFDLDRASDIIVDTAADFLQKFDNITYIRLVLVDLSEKSRILSLVKEKASKKSID
CSRFFTFVGDITQLHTKGGLRCSVIANAANWRLKPGGGGVNAAIFSAAGESLHHATKKCA
DALRPGTSVVVPLPSISPLHQREGVTHVIHVLGPNMNPMRPDYLKNDYIKGSKILHEAYN
SLFENFASIVRGHMGKQNEKLGPEMSASGGTSPNDTKMKREDSHGSERMKKHKLLPPIMT
VKQQHECTKANMPNYHDKSITSSAAPNQAREGDTKKSGVVASKTWGSWAQALYELAMHPE
KYKNTDSIMETSDEFIVLKDLYPKAKRHVLVISRTDGLDSLADVKKEHLPLLRRMHSAGV
KWAQKFLEEDASLVFRLGYHSVPSMRQLHLHIISQDFDSTSLKNKKHWNSFTTPFFRDSV
DVIEEIEQHGSATASSDEKILAMELRCHRCRSAHPNIPKLKSHIANCKSSFPSHLLQKNR
LTSS
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccgacgggggcggctccagttcctccccgccgcctccgtccgcaagccgaggc
gcgggcgcggaggcaaaggaggaggagcgcggcggcaagcaggtggtggtggtgctggtg
ggcccgccgggaagcggcaagtccacgttcgccgatgccgtcgttgccggctccaacgcc
ggccgccggtgggttcgcatctgccaggatacaattggaaatggtaaagctgggacaaaa
atacagtgcttgaaggctacatctgatgctttgaaggagggcaagagcgttctcattgac
cgctgcaacttggaacgagagcagcgtgcagactttgtgaagctgggcagcacattgcat
gtggatgtgcatgctgtagccctggatttacctgctaaggtctgtatctcgcgtgcagtg
agccgtaagggccatgaaggaaatctgcagggtggaaaggccgcccttgttgtgaaccgg
atgctgcaaaagaaggagacacccttgctgacagaaggtttcagtaggatcatgtcctgt
aatgatgatggtgacattaaaaaggcagttgatttgtataatgctttagggccttcagat
agtcttccatcaggaattttttgtcagaagagcaaaggacccgtgcaagttggtataatg
aagtttctaaagaagggtgatacttccactgttgagaaatccagtggacccaagattaca
ttgagtgaaaccaagccagagcagcaaaaacctttgccaaaacatgaaaaggttgaagaa
ggtatgtcctgcccaatggaaattgagaaggggttgaatgacaagaacgaaaatgaagag
catgctaaagaatgtgattctggtgatgttgattcctgcactctggcatttccatctatt
tctactgctgacttccagtttgatcttgacagagcatctgacattatagtagacacagct
gctgatttcttgcagaaatttgataatataacttatataagactagttcttgtagacctt
agcgagaaatcaagaatattatcattggtcaaagagaaggcttctaaaaagagcattgac
tgcagcaggtttttcacattcgtgggagatatcactcagttgcacacgaaaggaggtctt
cggtgcagcgtgattgctaatgctgctaactggaggttaaagcctggaggtggaggggtt
aatgcggcaatattcagtgctgctggagaatctttacatcatgcaaccaaaaaatgtgct
gatgcactgaggccaggaacctctgttgttgttccacttccatcaatttctcctctgcat
caacgagaaggtgtgacccatgtcatccatgtgcttgggccaaatatgaacccaatgcga
ccagattatctgaagaatgactatatcaaagggtctaagattcttcatgaagcatacaat
tcgctttttgagaattttgcatccattgtccggggccacatgggaaagcagaacgaaaag
ttggggccagaaatgtcagcatccggtgggacatcacccaatgacacaaaaatgaagcgc
gaggacagccatggatctgaaaggatgaaaaaacataagttgcttccacccatcatgact
gtgaagcaacagcatgagtgtacaaaggctaacatgccaaattaccatgataaatccatc
acttcatctgctgctccaaaccaagctagggaaggagacacaaaaaagagtggtgtggtc
gccagtaagacttggggatcgtgggcccaggccctttatgaacttgccatgcacccagag
aaatacaagaacacagattctatcatggagacatctgacgaatttatcgttctgaaagat
ctctatccaaaggctaaaaggcatgttttggtgatatctaggacagatggtcttgactcc
ctagcagatgtcaaaaaagaacacttgcctttgctgaggaggatgcattcagctggggtg
aagtgggcacagaagttcctcgaggaagatgcatctttggtgttcaggcttggataccac
tcggttccatctatgcggcaactgcatcttcacattattagtcaggattttgactccacg
agcttgaaaaacaagaagcactggaactccttcaccacaccgttttttcgtgattctgtt
gatgtcattgaggagattgagcagcatggatcagcaactgccagcagtgatgaaaagata
ctggcaatggaacttcggtgccacaggtgcaggagcgcccatccaaacatcccaaagctg
aaatcccacatcgcgaactgtaaatcttccttcccttcacatcttctgcagaaaaacagg
ttgacatcatcatag
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