Panicum virgatum (switchgrass): 120652795
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Entry
120652795 CDS
T07260
Name
(RefSeq) ABC transporter B family member 20-like
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120652795
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120652795
04147 Exosome [BR:
pvir04147
]
120652795
04090 CD molecules [BR:
pvir04090
]
120652795
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120652795
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120652795
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120652795
CD molecules [BR:
pvir04090
]
Proteins
120652795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_21
AAA_29
AAA_15
Zeta_toxin
AAA_22
RsgA_GTPase
AAA_16
AAA_30
ABC_ATPase
Motif
Other DBs
NCBI-GeneID:
120652795
NCBI-ProteinID:
XP_039786656
LinkDB
All DBs
Position
9K:58865179..58873487
Genome browser
AA seq
1413 aa
AA seq
DB search
MVPTGLFGWASPHVQPLTPVSEVSEPPESPSPYGDGPAGDAGVGAREGEGTGAGEEEVEE
DEVEPPPAAVSFWRLFEFADGLDWALMAAGALAAAAHGAALVVYLHYFGRTLNLLDSERV
ESALHGRSDELLHRFKEHALYIVYIAAGVFIAGWIEVSCWILTGERQTAVIRSKYVQVLL
NQDMSFFDTYGNNGDIVSQVLSDVLLIQSAISEKVGNYIHNMATFIGGLIVGLLNCWQIA
LLTLATGPLIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKY
SYATSLQATLRYGILISLVQGIGLGFTYGLAICSCALQLWVGRHLIHKGKADGGEVVVAL
FSVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSTSSTNQEGITLPQVQGNIEFRNV
YFSYLSRPEIPILSGFFLTVPARKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN
IKNMKIEWLRSQIGLVTQEPALLSLSIRENIAYGRSASFDQIEEAAKTAHAHGFISSLEK
GYETQVGRAGIALTDEQKIKISIARAVLSNPSILLLDEVTGGLDFEAEKAVQEALDVLML
GRSTIIIARRLSLIKNADYIAVMEEGHLVEMGTHDELLNLDGLYAELLRCEEATKLPKRM
PTKNSRERKSLQIEDASVSQYFQESSSPKMTKSPSLQRTHGMLQFWRSDTNRNSHDSPKD
RSPPSEQTVDNGIPMVAIEAERVPSIKRQDSFEMKLPDLPKVDVHPIQRQSSKNSEPDSP
ISPLLTSDPKNERSHSQTFSRPQSERDYTSSEQSELDEVQHQKPPSFWRLASLSIAEWPY
ALLGTIGAAIFGSFNPLLAYTIALIVSAYYRIDTNDMRHDVNMWCLFIVGMGVITVLVNW
LQHFYFGIMGEKMTERIRRMMFSGMLRNEVGWFDKEENNADTLSMRLANDATFVRAAFSN
RLSIFIQDTAAVSVALLIGMLLAWRVALVALATLPVLVISAIAQKLWLAGFSRGIQEMHR
KASLVLEDAVRNIYTVVAFCAGNKIMELYRLHLGKILKQSLVQGLAIGFGFGLSQFLLFA
CNALLLWYTAFSVDQQRLTIATGLKEYILFSFASFALVEPFGLAPYILKRRKSLMSVFEI
IDREPKIDPDDTTGLKPPNVYGSIEFKNVDFSYPAHPEILVLSNFNLKVSGGQTVAVVGV
SGSGKSTIISLIERFYDPVSGQVLLDGRDLKSFNLRWLRSHMGLIQQEPVIFSTTIRENI
IYARHNATEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN
APILLLDEASSAIESESSRVVQEALDTLVMGNKTTILIAHRAAMMKHVDNIVVLNGGRIV
EQGTHDSLMDQNGLYVRLMQPHFGKGLRQHRLM
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atggtgccgacggggctgttcgggtgggcgtcgccgcacgtgcagccgctcacgcccgtg
tccgaggtctccgagccgccggagtcgccgtcgccgtacggggacgggccagcgggggat
gcgggcgtgggggcgagggagggggaaggcaccggcgccggcgaggaggaggtggaggaa
gacgaggtcgagccgccgcccgcggccgtgtcgttctggaggcttttcgagtttgccgat
gggctcgactgggcgctcatggctgctggggcgctcgctgctgccgcgcatggtgcggcg
ctcgttgtgtacctgcactactttgggaggacactaaatttgctcgactctgagcgggtt
gagtcagctctccatggacgcagcgatgagctgctccaccgatttaaggagcatgcgttg
tatatcgtctatatagctgctggtgttttcatcgcaggatggatagaggtatcatgctgg
attctcactggggaacggcagactgctgtcatcagatcaaaatacgttcaggttttacta
aaccaagacatgagcttctttgatacatatggtaacaacggtgatatagtcagtcaagtg
ctgagtgatgtattgctcattcagtcagctataagcgaaaaagttgggaactacatacac
aatatggctacatttattggtggtctcattgttggccttctcaattgttggcaaatagca
cttctaactcttgccactggacccttgattgttgcagcaggaggaatatctaacatattc
cttcacaggctggctgaaaacattcaagatgcatacgctgaagcggctagcattgctgaa
caggccgtctcatacatcaggacactgtatgcttttacgaatgaaactcttgcaaagtac
tcctatgctacctcacttcaagccacactgagatatggaattttgataagccttgtccaa
ggaattggccttggatttacatacggacttgccatttgctcttgtgctttgcaactttgg
gttggaagacatctgatacataaaggaaaagctgatggtggtgaagttgtggtagcttta
ttctctgtaattctgagcggccttggtttgaatcaagcagctacaaacttctattcattt
gagcaaggacgcattgctgcttatagactatatgagatgattagtcgttcaacttccagc
acgaatcaagaagggatcaccttaccccaagtgcaggggaatattgaatttagaaatgtg
tattttagctacctgtctcgtccagaaattccaatattaagtggattcttcctcactgta
ccggcgagaaaaactgttgcacttgttggtagaaatggctcagggaaaagcagtataatt
cctctgatggagagattctatgacccaacattaggtgaagttcttttggatggtgaaaac
ataaaaaatatgaaaatagaatggttaagaagccaaattggtctggtgacacaagaacca
gctttattgagtttaagcattcgggaaaatattgcttatggaagatctgcttcctttgat
cagatagaagaggcagcaaagactgcccatgcccatgggttcatcagttcacttgaaaag
gggtatgaaacccaggttggtcgagctggtatagcactcactgatgaacaaaagatcaaa
atttcgattgcccgtgccgtgctttcgaatccatccattctgttgcttgatgaggtcacg
ggaggacttgattttgaagctgaaaaggctgtccaagaagcattagatgttctcatgttg
ggaagatcaaccattataattgctagacgtcttagcctcattaaaaatgctgattacata
gctgtaatggaggagggtcatcttgttgaaatgggtacacatgatgaactactgaactta
gatggcctttatgccgagcttttaaggtgtgaggaagcaacaaaacttcccaaaaggatg
cctaccaagaatagcagggagcgtaagtcactccaaattgaggacgcatcagtgagccaa
tactttcaagaatcctcctctcctaagatgacaaaatcaccttcacttcaaagaacacat
ggcatgcttcagttttggcgatcagataccaacagaaactcacatgattcaccaaaggac
cgaagtccaccttccgaacaaactgtggacaatgggatccctatggttgcaattgaagct
gagagagtgccttccatcaagagacaagatagttttgaaatgaaactgcctgatcttccg
aaagttgatgtccatcctatacaacggcagtcatctaagaactcagaacctgactcgccc
atatctcctcttttgacttctgatcctaagaatgagcgttcacattcacaaacttttagc
agaccacagagtgaacgagattatacgagttctgaacagagtgaactggatgaggttcag
caccagaaacctccatccttttggcgtcttgcatcacttagtattgctgaatggccttat
gcacttttgggtacaattggtgctgctatatttggctcttttaatcctctgcttgcttac
acaatagcacttattgtgtcagcatactatcgtatagacaccaatgatatgcgtcatgac
gtgaacatgtggtgtttattcatagtcggcatgggtgttattacagtgcttgtcaactgg
ttgcaacatttctattttggaataatgggggagaagatgactgagcgcataagaaggatg
atgttctctggaatgctgcgcaatgaagttggatggtttgacaaagaggagaacaatgct
gatacactgtccatgcgcctggcaaatgatgctacatttgtccgtgctgccttcagtaac
cgactttccatctttatacaagacactgctgcagtatctgtggctcttcttattggaatg
ttgttggcatggcgggtggcactagttgcacttgcaactttaccagttcttgttatctct
gctattgcacagaaattgtggcttgctggcttctcaaggggaatccaggagatgcataga
aaggcttcattagtacttgaagatgcagtacggaacatatacactgtagtagcattctgt
gctgggaacaagataatggagctctacagattacatcttggaaagatactgaagcaaagt
cttgtgcaaggattggctataggcttcggctttggtctctcgcagtttcttctttttgcc
tgcaacgctctacttctttggtacactgctttttcagttgaccagcaacgtctgacaata
gcaacaggactgaaagagtacattctcttttcatttgcatcattcgcattggtggagcct
tttggacttgcaccttatatacttaaaaggaggaaatctctaatgtcagtgtttgaaatt
attgaccgtgagccaaagattgatcctgatgataccactggcttgaaaccacccaatgtc
tatggaagtattgaattcaagaatgttgatttctcttatcctgctcaccctgaaattctt
gtgctgagcaattttaatcttaaagttagtggcgggcaaacagttgcagtagtaggggtc
tctggatcaggaaaaagcactattatttctttgatcgagagattctatgacccggtttct
ggccaagttctactggatggtcgagatctgaagtcatttaacctgagatggttgcgaagc
cacatgggcctgattcagcaagagccagttattttctcgacgacaataagagagaacatt
atttatgcaaggcacaatgcaacagaggctgagatgaaggaagctgcaaggatagcaaat
gctcatcatttcattagcagcttgccgcatggctatgacactcatgtggggatgagaggg
gttgatttaacacctggtcaaaaacaacggattgccattgctagggtggttttaaagaat
gcaccgatattgttgttggatgaggccagctctgctatcgagtctgaatcaagtagagtg
gtacaggaagctctcgacactctggtcatgggtaacaagacaacaattctcattgcgcac
agggcagcaatgatgaagcatgtggacaacattgttgtactaaatggtggtaggatagtt
gagcagggtacacatgactctctgatggaccagaatggtctatatgttagattgatgcaa
ccccattttggcaagggccttcgccagcatcggctaatgtaa
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integrated database retrieval system
