Panicum virgatum (switchgrass): 120652829
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Entry
120652829 CDS
T07260
Name
(RefSeq) heat shock cognate 70 kDa protein-like
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
pvir04141
Protein processing in endoplasmic reticulum
pvir04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120652829
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120652829
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120652829
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120652829
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120652829
03009 Ribosome biogenesis [BR:
pvir03009
]
120652829
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120652829
04131 Membrane trafficking [BR:
pvir04131
]
120652829
03051 Proteasome [BR:
pvir03051
]
120652829
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120652829
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120652829
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
120652829
Spliceosome [BR:
pvir03041
]
Complex B
Other components
Prp19 complex
120652829
Complex C
Prp19-CDC5 complex
120652829
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
120652829
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP70 / DNAK
120652829
Membrane trafficking [BR:
pvir04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
120652829
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
120652829
Proteasome [BR:
pvir03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
120652829
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
120652829
Exosome [BR:
pvir04147
]
Exosomal proteins
Proteins found in most exosomes
120652829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
Hydantoinase_A
Radial_spoke_3
DACNG
Motif
Other DBs
NCBI-GeneID:
120652829
NCBI-ProteinID:
XP_039786693
LinkDB
All DBs
Position
9K:complement(59279746..59282108)
Genome browser
AA seq
649 aa
AA seq
DB search
MAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLVGDAAKN
QVAMNPINTVFDAKRLIGRRFSDASVQSDIKLWPFKVVPGSADKPMIGVKFRGEEKQFSA
EEISSMILNKMKETAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEP
TAAAIAYGLDKKSSSDGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRLVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFY
TTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPRVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQAAILTGEGNEKVQDLLLLDVSPLSLGLETAGGVMTVLI
PRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQI
TVCFDMDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKK
KVDAKNSLENYAYNMRNTIRDDKIASKLPEADKKKIDDAIEGAITWLDNNQLAEVDEFED
KMKELEGICNPIIAKMYQGAAGPDMAAGMAEDAPPAGGSGAGPKIEEVD
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggccgggaagggagacgggccagcgatcgggatcgacctcggcaccacctactcgtgc
gtcggggtctggcagcatgaccgcgtcgagatcatcgccaacgaccagggcaaccgcacc
acgccgtcgtacgtcgcgttcaccgactccgagaggctcgtcggcgacgccgccaagaac
caggtcgccatgaaccccatcaacaccgtcttcgatgccaagcggctcatcggccggcgc
ttctcggacgcgtcggtgcagagcgacatcaagctgtggcctttcaaggtggtgccgggc
tccgccgacaagcccatgatcggggtcaagttcaggggcgaggagaagcagttctcggcc
gaggagatctcctccatgatcctcaacaagatgaaggagacggccgaggcctacctcggc
agcaccgtcaagaacgccgtcgtcaccgtcccggcctacttcaacgactcgcagcgccag
gccaccaaggacgccggcgtcatctccggcctcaacgtcatgcgcatcatcaacgagccc
accgccgcggccatcgcctacggcctcgacaagaagtcgagcagcgacggcgagaagaac
gtgctcatcttcgacctcggcggcggcaccttcgacgtctcgctcctcaccatcgaggag
ggcatcttcgaggtcaaggccacggccggcgacacccacctgggcggcgaggacttcgac
aaccgcctcgtcaaccacttcgtgcaggagttcaagaggaagaacaagaaggacatcagc
ggcaaccccagggcgctccggcgcctgcgcacggcctgcgagcgggccaagaggacgctc
tcctccaccgcccagaccaccatcgagatcgactccctctacgaaggcatcgacttctac
accaccatcacccgcgcccgctttgaggagctcaacatggacctcttccgcaagtgcatg
gagcccgtggagaagtgcctccgcgacgccaagatggacaagagcagcgtgcacgacgtc
gtgctcgtgggcggctccacccgcatcccccgcgtgcagcagctgctccaagacttcttc
aacggcaaggagctctgcaagagcatcaaccccgacgaggccgtcgcgtacggcgccgcc
gtccaggccgccatcctcaccggcgaaggcaacgagaaggtgcaggacctgctcctgctc
gacgtctcgccgctctcgctcggcctggagacggccggtggcgtcatgacggtgctgatc
ccgaggaacaccaccatcccgaccaagaaggagcaggtcttctccacctactccgacaac
cagcccggcgtgctcatccaggtgtacgagggtgagagggcccggaccaaggacaacaac
ctgctcggcaagttcgagctgtctggcatcccgccggcgcccaggggcgtcccccagatc
accgtgtgcttcgacatggacgccaacggcatcctcaacgtgtcggcggaggacaagacc
accggccagaagaacaagatcaccatcaccaacgacaagggccggctgagcaaggaggag
atcgagaagatggtgcaggaggccgagaagtacaaggccgaggacgaggagcacaagaag
aaggtggacgccaagaactcgctcgagaactacgcctacaacatgcgcaacaccatcagg
gacgacaagatcgcgtccaagctcccggaggccgacaagaagaagatcgacgacgccatc
gagggggccatcacctggctggacaacaaccagctcgccgaggttgacgagtttgaggac
aagatgaaggaactggagggcatctgcaaccccatcatcgccaagatgtaccagggcgcc
gctggtcctgacatggccgctggcatggccgaggatgctccgccggccggcggcagcggt
gctggacccaagatcgaggaagtcgactaa
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