Panicum virgatum (switchgrass): 120652871
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Entry
120652871 CDS
T07260
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120652871
03015 mRNA surveillance pathway
120652871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120652871
03041 Spliceosome [BR:
pvir03041
]
120652871
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120652871
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
120652871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
120652871
NCBI-ProteinID:
XP_039786735
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All DBs
Position
9K:59648681..59655548
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AA seq
842 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKTQKFAPELDHLVDMSKVKMDVMKPWIAKRVTELL
GFEDEVLINFIYGLLEEKEADGKKIQIQLTGFMEKNTVKFMKELWTLLLSAQQNASGVPQ
QFLDAKEAEIQQRKAEDDRIAQEIQKKREKEGRDLELEKQKRMDGNAGNSRSSGDPTGSA
INNTTVNAEEEMDLDFKRSSRTKNRGSRRSRSISLSPRGRRRSISPRKRPRSPSRRSRSI
DRQRGSSRRSTSPRRSASPRRHSPRRRSPYSRRGSPSLPRYPSPSSRRRSPLRRKSPSSG
SRRSPSPRHRRSPAHVSRRSPSPARRMSPVRRRFSSGRHRSPSPARRRPRSPSPGRRRPR
SPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSPSPGSHRPHSPSPGRHRPWSRSPVKRRSP
SPKRRRRSPSPRTRYANRRPSPQRRRGISPYSSKSPNRSRRSLSIEADKRTDGTPSIKDR
VVPERDQERRSDGDNDRDGARIGDGRSTDSEHRLLKSLRSPNNEERNSTCDRSSGKQLPS
QDSTDASGDEEEGSRARENARKANSARRKTKDSADRRLNKIGAGASSPGEKSPFMIQSGK
GVLKKHPDQLSESSEDDLVGRSHRTDSPDERSPPRIEKDDLHPKDGRESEHAMMDSRDES
DDAIKAKKFISEVNGDSQSEDGSPVKKPKKRTDTKSHIDSRSSGSEEPDKHRSHSEKRRH
KKAHRHKRKHDDSSESDTESDGKEAKRRRKEEKRLRKEERRRRREERHRRRAERHASKQK
MKQTHADALPSDSEKDRDSNSDVDVRKRGSPAGREESDQKKLEIELREKALESLRAKKAI
NN
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcttcttccgggggacgtccgctgaccaggacacgcgcttctccaacaag
caggcgaagctgctcaagacacagaagttcgcgcctgagcttgaccacttggtggacatg
tctaaggtcaagatggatgtgatgaagccctggatcgccaagagggtcactgagctcctc
gggttcgaggacgaagtgctcatcaacttcatctatggcctcctcgaagagaaggaggcg
gatgggaagaagattcagatccagctgacagggttcatggagaagaacacagtgaaattc
atgaaggagctctggaccctcctcctaagtgcgcaacagaatgcaagtggggtacctcaa
cagtttctagatgcaaaggaggctgaaatacagcagagaaaggcggaggatgatagaatt
gcacaggagatccaaaagaagcgggagaaagagggaagagacttagaattggagaagcag
aaaaggatggatggtaatgctggcaactcaagatcctctggcgatccaactggctctgct
ataaataatacaactgtcaatgctgaggaagaaatggacttggacttcaaacgcagctca
agaacaaagaaccggggaagtcgcagatccaggagcatatctttgtcgcctcgtggtagg
cgaagatctatttctcccagaaagcgtcctcgatctccttccaggcgttcccgctcaatt
gatagacagcgtggatcgtcacggcgttcaacttcacctagacgctctgcttctccccga
aggcattctccaagaaggagatcaccttattcaaggagaggttcaccttcattgccaagg
tatccatccccatcttcacgccggagatctcctcttcgcagaaaatcaccatcgtctggg
tcacgaaggtcaccttctcctcgccatcgtcgttcgccagctcatgtgtcaaggaggtca
ccatctcctgcacgtcgaatgtcgcctgtccgacgcaggttttcatcaggtagacatcga
tctccatctcctgcaaggcgtaggccaagatccccatctccgggaaggcgcaggccacgc
tccccatctccaggaaggcgcaggcctcggtcgccttctccaggaaggcgcaggccacgg
tcgccgtctccgggaaggcgcaggccacggtccccatctcctggaagtcacagaccacac
tccccgtctcctggaagacataggccatggtctcgatctccagtaaaacgtcggtcccca
tctccaaaacgccggaggagatccccatcaccaagaactcgttatgcaaatcgacgtccg
tctccacagaggagaaggggtatcagtccgtacagtagcaaaagtcctaatcgttctcgc
cggagtttgagtatagaggctgacaaaagaacagatggcaccccctccattaaggacaga
gttgtacctgaaagggaccaagaacgaagatcagatggtgataatgatagggatggtgca
aggattggcgatggtcgttccacagattccgaacataggttgttaaaatccttgaggtcg
cctaacaatgaagaaaggaactccacatgtgataggagctcaggtaaacaattacctagt
caggacagcacagatgcaagtggagatgaggaggaaggcagtcgtgctagagagaatgca
cggaaagcaaattcagcacgtaggaaaactaaggattccgcagatcggcgactgaacaaa
attggagctggtgcctcaagccctggggaaaaatcaccattcatgatacagagtggcaag
ggtgtcctgaagaaacaccctgatcaactatcagaatcatcggaagatgaccttgttggt
agaagccacagaacagattctcctgatgagcgttccccacctagaattgaaaaggatgac
ttgcacccaaaggatgggagggaaagtgagcatgccatgatggattcacgtgatgaatct
gatgatgctatcaaggcaaagaaatttatctctgaagtcaatggggactcccaatcagaa
gatggaagtcctgtcaaaaagcccaagaaaagaacagatactaaaagccacattgattct
cgtagttcagggtctgaagaacctgacaaacatagatcccactctgagaagcgaaggcac
aagaaggctcataggcataagaggaaacatgatgatagttctgagtctgataccgagtca
gatggcaaagaggcaaagaggaggaggaaggaagaaaaaagactcagaaaagaagaaaga
cgtcgaagacgtgaagagcggcatcgcagaagggcagaacgccatgccagcaaacaaaaa
atgaagcagactcatgctgatgcactgccctcagattctgagaaggatcgggattctaat
tcagatgttgatgttaggaaaagaggttcacctgctggcagagaagagtctgatcagaag
aaacttgaaattgagcttcgtgagaaggcccttgagtctcttcgagcaaagaaagccatc
aacaactag
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