Panicum virgatum (switchgrass): 120652951
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Entry
120652951 CDS
T07260
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase component HRD3
KO
K14026
SEL1 protein
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120652951
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Gene cluster
GFIT
Motif
Pfam:
Sel1
TPR_6
Motif
Other DBs
NCBI-GeneID:
120652951
NCBI-ProteinID:
XP_039786850
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Position
9K:complement(60380369..60388240)
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AA seq
683 aa
AA seq
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MARVIRRPLLLAAVSVAVAVSLVRLAAAVRPFVLVLSVDDFLKDSSAHPSLPSADSAGAD
TDADEWDDFADDSPAADPLLSPSSWVPLLDPTSSPPSGDEPDSPADSLFVAGARAILSAA
SEGDDVAFVTASAQIEAAAAAGHPGAQSALAFLSGAGMTRPASRSRAFLLHKFAADAGDL
QSKMAIAYSYFRQEMYEEAVKLYAELAEAALTSSLISKEPPVIEPIRLHSGTEENKEALR
KSRGEDDEDFQITEYQAQRGNSAAMYKLGLLYYYGLRGLRRDYVKAFHWFSKAVEKGDTR
AMELLGEIYARGAGVERNYSEAYKWLALAAKQQHYSAYNGLGYLYVKGYGVEKKNLTKAR
EYFKLAADNKEAGGHYNLGVLYLKGIGVKRDIMEACNHLLQAVNAGQPKAIYQVAKLFQK
GIGLKKNLHMATMLYKSVAERGPWSSLSRWALESYLKGDVGKALLLYSRMADLGYEVAQS
NAAWILDRYGDQSICMGESGFCTDMERHLRSHALWWQASEQGNEHAALLIGDAYYYGRGV
ARDYERAAEAYMHAQSQSNAQAMFNLGYMHEHGHGLPLDLHLAKRYYDQAVTVDSAAKLP
VMLALTSLWLRKNYADSFLVRFIDSLPEIYPVVEEWVEDVLMDEGNATILTLFACLVTVL
YLRERQRRQVAAANPQQPDGAPM
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgtcatccgccgccctctcctcctcgccgccgtctccgtcgccgtcgccgtc
tctctcgtccgcctggccgccgcggtgcgccccttcgtgctggtcttatccgtcgacgac
ttcctgaaggactcctcggcgcacccctccctgccgtccgccgactccgccggcgccgac
accgacgccgacgagtgggacgacttcgcggacgactcgccggccgcggacccgctccta
tccccgtcctcctgggtccccctcctcgatcccaccagctctcccccctcgggcgatgag
ccggactcgccggccgactcgctcttcgtcgcgggcgcccgcgccattctctccgcggcg
tccgagggggacgatgtggctttcgtcactgcctccgcgcagatcgaggccgcggccgcg
gcggggcacccaggcgcgcagtccgcgctcgcgttcctctctggcgccgggatgacgcga
ccggcgtcccgatcgcgcgcgttcctgctgcacaagttcgcggctgacgcgggagatctc
cagtctaagatggccatcgcgtactcctacttccgccaggagatgtatgaagaagctgtt
aaactatatgctgaacttgcagaagctgccctaacaagctccttgatatcaaaggagcct
ccagtgattgaaccaatccgcctccacagtggaactgaagaaaacaaagaggccttgagg
aagtcccggggtgaggatgatgaagattttcaaatcacagagtaccaggcacaacgaggc
aattctgctgctatgtacaaattagggctactgtattactatggactacgagggctccga
cgtgattatgtaaaagcatttcattggttttcaaaggctgttgagaaaggtgacacacgg
gcaatggagcttctgggtgagatctatgctagaggtgctggagtggaaaggaactatagt
gaagcatacaagtggttggcacttgctgcaaagcagcaacattactcagcttacaatgga
ttgggttatctatatgtcaaaggctatggggtggagaagaagaacttgacaaaggcaagg
gaatattttaaacttgcagctgacaataaggaagctgggggacattataaccttggtgtg
ttgtatcttaagggtattggtgtaaagagggatattatggaagcatgcaatcacttgctt
caagcagttaatgctgggcaaccaaaagctatttatcaggtggcaaaattgttccagaaa
ggcattggcctgaagaagaatctccatatggcaacaatgctgtacaagtctgttgctgag
aggggaccctggagttcactatccagatgggccctggaatcttatttgaaaggtgatgtg
gggaaagcattgctcttatattccagaatggcagatcttggatatgaggttgcacagagt
aatgctgcctggattcttgataggtatggtgatcaaagtatttgcatgggagaatctggc
ttctgcacagatatggaaagacatcttcgttcacatgctttgtggtggcaagcatctgag
cagggtaatgagcatgctgctttattgatcggtgatgcctactactatggtcggggtgtt
gcaagggattacgaacgtgcagcagaagcatatatgcatgctcagtcacagtctaatgct
caagcaatgtttaaccttgggtacatgcatgagcatggccatggacttccccttgatttg
catttggcaaaaagatattatgatcaagcagttacggtggattcagctgctaaactccct
gtcatgcttgcacttacaagtttatggctaagaaagaactacgcagacagtttcttggtt
cgttttattgattcgctgccggagatatatcctgtcgttgaggaatgggtggaggatgtt
ctcatggatgaagggaatgcaacaatattgactctcttcgcttgccttgtaactgtcctg
tacttgcgagagcgtcaaaggcgtcaagtggcggcagccaacccccaacaacctgatggt
gcacccatgtaa
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