Panicum virgatum (switchgrass): 120652977
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Entry
120652977 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase HOS1-like
KO
K16278
E3 ubiquitin-protein ligase HOS1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120652977
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120652977
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120652977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ELYS
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
120652977
NCBI-ProteinID:
XP_039786888
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All DBs
Position
9K:complement(60583315..60595121)
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AA seq
943 aa
AA seq
DB search
MEALPSSPRHPPKYGSAVVQNALEQLASIDLIELCKEARIEHCRATRDLSSCGRYVHHVL
NSCGHASLCAECSQRCDVCPICRSPIPDNGNRVRLRLYYKCIEAGLISKQHDERFHEKED
HGNPVNTDVQRLHSLFDVALQNNLTSLICHYITDVCLDENAVSSDPLLAFLLDEVVIKDW
CKRAVNALISEIGMIYRSGLEMMQSKLSQLQKFAAQLAGIYSVLEVMIASFTEAVSAHVN
DLHQLIENTLKAKQHLEAMIWCIRHRFVQDICSRYTDYESWSSDVIQRKASAEARKWPDF
FDKQSGDNGANQGTLFIEQALQNLGIEQSYRNEEEAAITCLQNEQSSSMFYSTITADHFS
LNRYPFKNLREAVDVLFLHGASDMVIAKQAIILYYLFDRHWTRPDSEWRYLLDDFAATFG
ITNRTLLECLVFCLLDDHSSEALEEACSLLPKISSKETHPKIAKVLLERHRPDMALVVLK
GTGHGSFSATEDIEKDGIPSLSEAVTAVRVRIEYSLLTEAFMYHRSYCSRVKEQRAADII
HSEDALRSSWVYHVEVMMNEFCTICIERNFVDKMIDLPWDSEEEKHLHKLLFDSACEMPT
KPCGSLLVVYYLRRYQYLEAYEVDRNLQRFEQKKLESTTEEIASKIRTIAQWRENLVAKC
LDMLPEVQREIVKAINTGEQSQFARTAQISSPVSHVFKAQSPVIELSSSFNPLLQNKSSL
HSKNINALTDSGGMIRSSHSEFGRKVPSVLQSRVIPQMTPAFNMRAGGIFPSVGQNGESP
FLRGAKDISSRKGEAGFKKGIQPADDSLPMYLNLNSGDTPMKDYQTSLLKTEVNKTTSFQ
DYAGKGKFHFGSRSEKPFILNGTGVGQNGLPKISGTAGFHGDYKLPTKENILSSSKKYSV
DEAAASKGVSRWRSDESSEDEDERRTNRGSRALVTRRRPRFSR
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggaggccctcccttcctcgccgaggcaccctcccaagtacggcagcgccgtcgtccag
aatgctttggagcagctggcatccattgatctcatcgagctatgcaaggaggctagaatt
gagcactgccgtgcgactagagatttgagtagctgcggccgctatgtgcatcatgtgctt
aactcatgtggccatgcctcattatgtgctgagtgcagccaaagatgtgatgtctgccca
atctgcagaagtccaataccggacaatgggaatagggttcggctacgcctttactacaag
tgcattgaagcgggccttatttctaagcagcatgatgaaaggtttcacgaaaaggaagac
catggcaatcctgttaacacggatgtccagcggctgcattcgttgtttgatgttgcactc
cagaacaatctcacatccttgatttgccactatatcacagatgtttgtttggatgagaat
gctgtgtcaagcgatccacttctggcttttcttttggatgaggtggtcatcaaggactgg
tgcaagagggccgtaaatgcactcatttctgagattggcatgatttatagatctggcttg
gaaatgatgcaatctaagttatcccaactgcaaaagtttgcagcacagttggcaggaatt
tacagtgtacttgaagttatgattgcatctttcacagaagcagtttcagctcatgttaat
gacctgcatcaactcattgagaatacattgaaggcaaagcagcatttagaggccatgata
tggtgcatcaggcatagatttgttcaagacatctgctcacggtacactgattatgaatca
tggagctctgatgtaattcaaagaaaggcatctgcagaagcaagaaaatggcctgatttt
tttgataaacagtcaggagacaatggagccaatcagggtacactattcatcgagcaggca
ctacaaaaccttgggattgaacaaagttataggaacgaggaagaagcagcaatcacttgt
ttgcagaatgaacaatcatcatccatgttctattccacaattacagccgatcattttagt
ctgaacagatacccatttaaaaatttgcgtgaggcagttgacgtactctttctccacgga
gcatcagacatggtgattgcaaagcaagctattatattatattatctatttgatcggcat
tggactagaccagattcagaatggaggtatttactggatgattttgctgctacctttggg
attactaatagaacattgctcgagtgcctggtattttgtcttctagatgatcattcttca
gaagccttggaggaggcatgctctcttcttcccaagatctctagcaaggagacacatcca
aagatagcaaaagttcttttagaacgtcacagacctgatatggcactggttgtcctaaag
ggcacaggacatggtagcttctctgctacagaagacattgaaaaagatggcattccatcg
cttagtgaagcagtaactgcagttcgcgtaagaattgaatacagcctcctaacagaagca
tttatgtatcatagaagctattgttctagggtgaaagaacagcgagcagcagatattata
cattctgaggatgcactcagaagctcttgggtttatcacgttgaggtgatgatgaatgaa
ttttgtactatctgcatcgaaaggaattttgttgataaaatgattgatctgccctgggat
tctgaggaagagaaacatcttcacaagttgcttttcgactctgcttgtgaaatgcccaca
aaaccatgtggtagtctgcttgttgtttactaccttcggcgttaccaatatttggaggca
tatgaggttgatcgtaatcttcagaggtttgagcaaaagaaattggaaagtactaccgaa
gagattgcttcaaaaatcagaacaattgctcaatggcgggaaaatttggttgctaaatgc
cttgatatgcttccggaggtccagagagagattgtgaaagccatcaacactggagaacaa
agtcagtttgctcgaactgctcaaatatcttctccagttagtcatgtgttcaaagcacaa
agtcctgtcatcgagttgagctcatcgtttaaccctcttcttcaaaataagtcaagcctc
cactcaaaaaatatcaatgcattgactgattctggtggtatgattagaagcagccattca
gagtttggtagaaaggttccatctgttctacaatccagggtgattccccagatgacgcct
gcgttcaatatgagagctgggggcatattcccctctgtgggacagaatggtgagagtcca
tttttaaggggggctaaagacatcagttctagaaaaggagaggcaggtttcaaaaaagga
attcaacctgctgatgattcacttcctatgtatttgaacttgaattctggtgatacacct
atgaaagactaccagacaagtttgttgaagaccgaggttaacaaaaccacttcttttcaa
gattatgctggaaaaggaaagtttcactttggttcacgttctgagaagcctttcatctta
aatggaacgggtgttggtcaaaacggcctccctaagatatctgggactgctggttttcat
ggagattataaattaccaacgaaggagaacatcttgagctccagcaagaaatattcagtt
gatgaagcagcagccagcaaaggtgtgtcaaggtggagatccgacgagtctagtgaggat
gaagatgagagaagaacaaaccgggggagcagagctcttgttactagaaggcgaccgaga
ttttcaagatga
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