Panicum virgatum (switchgrass): 120653412
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Entry
120653412 CDS
T07260
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120653412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120653412
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120653412
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120653412
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
120653412
NCBI-ProteinID:
XP_039787096
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All DBs
Position
1N:20678759..20679772
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AA seq
337 aa
AA seq
DB search
MFPNGPSRPWRGGAPPMFPYPPPPYGAFMAPFAGPPRLPPPYAAFPYFGGVRHPAPYVQA
VVELQSVTASNFEAELDTVAALLPRHPYVVVDTEYPGTVHRPPAGTRDADLSPDERYALV
RANVDELPIVQLGLTLCDAHGNLPVVADYETGHHVERAWEFNFSDFDISRHRHAPQSVEF
LTSQGIDFDQARECGVSSAAFKSKLAGILSAAALAERELTWVAFGGAYDLAYLVKILGDG
QPLPETRAEFMARVRALLGGRVFDAKYMAENCGRGDLRGVGLRSVAANLGVPRPIVEPPC
LAGPKSLTACRIHTVMRLHVLSQNDVAAYEGLIDGLQ
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgttcccaaacggcccttcgcgtccgtggcgcggcggcgcgccgcccatgttcccgtac
ccgccgccgccgtacggtgccttcatggccccgttcgcggggcctccgcgcctcccgccg
ccgtacgccgccttcccgtacttcggcggcgtccggcaccccgcgccgtacgtccaggcg
gtggtcgagctgcagtccgtgacggcttctaacttcgaggcggagctggacacggtcgcc
gccctgctcccgcgccacccctacgtggtcgtggacacggagtacccgggcaccgtccac
cgcccgcccgccggcacgcgcgacgccgacctcagccccgacgagcgctacgcccttgtc
cgggccaacgtcgacgagctgcccatcgtgcagctcggcctcacgctctgcgacgcgcac
ggcaacttgcccgtcgtcgccgactacgagacgggccaccacgtcgagcgcgcctgggag
ttcaacttctcggacttcgacatcagccgccaccgccacgcgccccagtccgtcgagttc
ttgacgtcgcagggcatcgacttcgaccaggcgcgcgagtgcggcgtcagctcggcggcg
ttcaagagcaagctcgccgggatcctgtcggcggcggcgctggcggagcgcgagctgacc
tgggtggcgttcggcggggcgtacgacctggcgtacctcgtcaagattctcggcgacggg
cagccgctgccggagacgagggcggagttcatggcgagggtgagggcgctcctcggcggg
cgagtgttcgacgccaagtacatggccgagaactgcggccgcggggacctgcgcggcgtc
ggcctcaggagcgtggccgcaaatctcggcgtgccgaggcccatcgtggaaccgccatgc
ctcgccgggcccaagagtctcacggcctgccggatccatacggtgatgaggttgcacgtc
ctgtcccaaaacgacgtcgccgcctacgaaggcctcatcgacggattacagtga
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