KEGG   Panicum virgatum (switchgrass): 120653584
Entry
120653584         CDS       T07260                                 
Name
(RefSeq) SKP1-like protein 1A
  KO
K03094  S-phase kinase-associated protein 1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03083  Polycomb repressive complex
pvir04120  Ubiquitin mediated proteolysis
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120653584
   04120 Ubiquitin mediated proteolysis
    120653584
  09126 Chromosome
   03083 Polycomb repressive complex
    120653584
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120653584
   04121 Ubiquitin system [BR:pvir04121]
    120653584
   03036 Chromosome and associated proteins [BR:pvir03036]
    120653584
Membrane trafficking [BR:pvir04131]
 Endosome - Lysosome transport
  Acidification regulators
   RAVE complex
    120653584
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Adaptor protein
     120653584
   Cul7 complex
     120653584
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     120653584
  Centromeric chromatin formation proteins
   Kinetochore proteins
    CBF3 complex
     120653584
SSDB
Motif
Pfam: Skp1 Skp1_POZ
Other DBs
NCBI-GeneID: 120653584
NCBI-ProteinID: XP_039787231
LinkDB
Position
1N:complement(46338047..46338547)
AA seq 166 aa
MASDDEKKVRLRSKDGQVFEVREKAIGAFSVTITGMIGAGCADDDGVVELPNVSAATLSR
VLEYVERHFDFDDSHSSFIPSDDDPLARFDEELVSVDNDTLFDLLEAANFLNIVKLLDLT
CKAVAEQMRGKTTDEIRKKFHIVNDYTKEEEEDVRMENSWAFEEPV
NT seq 501 nt   +upstreamnt  +downstreamnt
atggcgtccgacgatgagaagaaggttcgcctccgcagcaaggacggccaggtcttcgag
gtgcgggagaaggccatcggcgccttctcggtcacgatcacgggcatgatcggcgcggga
tgtgccgacgacgacggcgtcgtcgagctcccgaacgtctccgccgccacgctctcccgc
gtcctcgagtacgtcgagaggcacttcgacttcgacgactcccactcctccttcatcccc
agcgacgacgaccccctcgcccgcttcgacgaggagctcgtcagcgtcgacaacgacacc
ctcttcgacctcttggaggcggccaacttcctcaacatcgtcaagctgctggacctgacg
tgcaaggcggtggcggagcagatgagagggaagacgaccgacgagatccgcaagaagttc
cacatcgtcaacgactacaccaaggaggaggaggaagatgtccgcatggagaactcgtgg
gcgttcgaggaacccgtgtga

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