Panicum virgatum (switchgrass): 120653599
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Entry
120653599 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120653599
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120653599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120653599
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120653599
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
ATPgrasp_ST
Motif
Other DBs
NCBI-GeneID:
120653599
NCBI-ProteinID:
XP_039787241
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Position
1N:47726042..47732834
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AA seq
316 aa
AA seq
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MFSHLKMSTAEVPNSKDPEIVDSLLLDLLDPENKAYALSMLPKKRETLNNLAPLLWYSFG
TIAALLQEIVSVYPALSPPTLSASAGNRACNALALLQTVAAHPETRTPFLKAEIPLYLFP
ILNTTSEAKSFEYLRVTGLGILGALAKCWCICEPMNRGSCIGSIYPILLGFGGIHLIVFS
YMVSEPSSLSPAAGSLCAAAAATMAGWPPPPPAFSSFPPLPASGSDAVAGFSSFPGGRSP
VPAWIQGVATSSALGAADSSARPPAAGATAAAAHTAGAAGTATAAAPAAPAGVRVAGAGT
AVRAAGFGLPTSAIPV
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgttttctcacttgaaaatgtcaacagccgaggttcctaattccaaagacccggaaatt
gttgattctcttctccttgatctgttagatccagaaaataaagcgtatgccctttccatg
ttacctaagaaaagggagacacttaataatttggctccactgctgtggtactcttttggc
acaatagctgcactgctccaggaaattgtgtcagtctaccctgcactttcacccccaaca
ttatcggcaagtgcagggaaccgagcctgcaatgcacttgcacttcttcagactgttgca
gcacaccctgagaccaggactccttttttaaaagctgaaattcccttgtacttgttccca
atcttgaacactaccagcgaggccaagtctttcgagtacctgcgtgttactggccttggt
attctcggtgctcttgctaagtgttggtgtatatgtgagcccatgaatagaggctcatgt
ataggatctatatatcccatccttctagggtttggaggaatacatctcattgttttctcc
tacatggtatcagagcctagctctctctctccagccgccgggtcactgtgcgccgccgcc
gccgccaccatggctggctggccgccgccaccgccggcgttctcctctttccctcctctc
cctgcttccggatctgacgccgtggccggcttctcttcctttcccggcggccgctcccct
gttcctgcgtggatccagggcgtcgccacctcctctgctttgggcgccgccgactcgtct
gctcggcctcccgccgctggcgccaccgccgccgccgcccacaccgcgggcgcggctggc
acggccacggccgccgcccccgcggcccctgctggcgtgcgcgtggcgggcgcgggcacg
gccgtccgcgcggcgggattcggcctcccgacgtccgctattccggtgtga
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