Panicum virgatum (switchgrass): 120653820
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Entry
120653820 CDS
T07260
Name
(RefSeq) SNW/SKI-interacting protein A-like
KO
K06063
SNW domain-containing protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120653820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120653820
Spliceosome [BR:
pvir03041
]
Complex B
Other components
Prp19-related factors
120653820
Complex C
120653820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SKIP_SNW
Motif
Other DBs
NCBI-GeneID:
120653820
NCBI-ProteinID:
XP_039787434
LinkDB
All DBs
Position
1N:complement(62014092..62017450)
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AA seq
606 aa
AA seq
DB search
MATLKDLLPAPKTSASTFYDHSSDPWFKERYGGDSAQASAAARPAGAARTIPPYGKRAGF
VPRRPEDFGDGGAFPEIHVAQYPLGMGRRDDKGGSKILALTVDAHGSVAFDAVVKQGENA
GKIVYSKHSDLVPKIATSDSQAPDEEEEEQKQIEETTERTKAALEKVVNVRLSAAQPKNV
PTHDSESKFIKYKPSQQSAAFNSGAKERIIRMSEMAVDPLEPPKFKHKRVPRASGSPPVP
VMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLS
EALYVAEQKAREAVQMRSKVQRELMLKEKERKEQELRALAQKARMERTGGPPAPSALPAG
GGRGTVDAIDKDMDMEQPREPREQRRESREEREARIERDRIREERRRERERERRLEAKDA
AMGKKSKITRDRDRDISEKIALGMASTGGAKGGEVMYDQRLFNQDKGMDSGFATDDQYNI
YSKGLFTAQSTMSTLYRPKKDGDSDVYGDADEQLEKVMKTERFKPDKAFTGASERTGKRD
RPVEFDKQEENDPFGLDQFLTEVKKGKKAVEKIGGGGTMKASGGSSMRDDYDGGSGRSRI
NFERGR
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctcaaggatctcctcccggcgcccaagacgtcggcgtccaccttctacgac
cacagcagcgacccctggttcaaggagcggtacggcggggactcggcgcaggcgtcggcc
gcggcgaggcccgcgggcgccgccagaaccatccctccgtacgggaagcgggcggggttc
gtgccgcgccggccggaggactttggggatggcggcgccttcccggagatccatgtcgcg
cagtatccactcggcatgggccgccgcgacgacaagggcgggtccaagatcctcgcgctc
accgtcgacgcgcacgggagcgtcgccttcgacgccgtcgtcaagcagggcgagaacgcc
ggcaagatcgtctactccaagcacagcgacctcgtgccgaagatcgccacgtccgattcg
caggcgccggacgaggaggaggaggagcagaagcagatcgaggagaccacagagcggacg
aaggctgccttggagaaggttgtcaacgtccgcctctcagctgctcagcccaagaatgtg
ccgacacatgattctgagtccaagtttatcaagtataagccgtctcagcaatcagcggcc
ttcaattcaggtgccaaggagaggatcattcggatgtcggagatggcggtggatcctctt
gagccgccaaagttcaagcacaagcgtgtgccccgggcgtctgggtcaccacctgtgccg
gtgatgcactcgccaccgcggccagttacagtgaaggatcagcaggattggaagatccca
ccatgcatttctaactggaaaaatccgaagggttacacgattccacttgataagaggctg
gcggctgatggaagagggctacaggaggtgcaaattaatgacaactttgcaaagctttct
gaagcattgtatgtggcagaacagaaggcgagggaggcagtacaaatgcgctccaaggtg
cagagggaactgatgcttaaggagaaggagagaaaggagcaagagctgagggctcttgca
cagaaggctcgcatggagaggactggtggcccacccgcaccatcagctttgcctgctggt
ggtggcaggggaacagttgatgctatcgataaagacatggatatggagcaaccacgtgaa
ccgcgtgagcagcgcagggagagtagagaagagagggaagcaaggattgagcgtgataga
atccgtgaggagcgcagacgggagagggagagagagaggaggctggaagccaaggatgct
gcaatgggcaagaagagtaagatcacgagagacagggatcgtgacatcagtgagaagatt
gctctgggtatggcaagcactggtggtgccaaaggtggcgaggtcatgtatgaccagcgt
ctattcaaccaggacaaggggatggactctgggtttgccacggatgatcagtacaacatc
tactccaaggggctcttcacagcgcagtctacgatgtctacgttgtatagacctaagaag
gatggtgattctgatgtgtatggtgatgcggatgaacagttggagaaggttatgaagact
gagaggttcaagcctgacaaggcttttactggtgcttccgagaggactggcaagcgcgac
cggcctgtggagtttgataagcaggaggagaacgatcccttcggtctggatcagttcttg
actgaggtgaagaagggaaagaaagctgtggagaagatcggaggcggaggcaccatgaag
gcgagtggtgggtcctcaatgagggatgattatgatggaggatctgggaggtcccgcatt
aattttgaaagggggcgttga
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