KEGG   Panicum virgatum (switchgrass): 120653937
Entry
120653937         CDS       T07260                                 
Name
(RefSeq) syntaxin-124-like
  KO
K08486  syntaxin 1B/2/3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04130  SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04130 SNARE interactions in vesicular transport
    120653937
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120653937
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120653937
Membrane trafficking [BR:pvir04131]
 SNARE
  Syntaxin (Qa)
   Stx-PM
    120653937
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of epithelial cells
   120653937
  Exosomal proteins of other body fluids (saliva and urine)
   120653937
SSDB
Motif
Pfam: Syntaxin SNARE PigL_N
Other DBs
NCBI-GeneID: 120653937
NCBI-ProteinID: XP_039787532
LinkDB
Position
1N:complement(9559308..9560219)
AA seq 303 aa
MNDLFSSGSFKKYADLKQQVVLDDLEASGGGGEAEGPDLDRFFEDVEAVKEDLRGLEALH
RRQRAAHEEGKTAHDAGAVKALRARTDADVGQVLDRANAASRRLPGCGPGSSTDRTRTSV
VTGLGKKLKDLMDDFQGLRARMAAEYKETVARRYYTVTGETAEDGTVEALISSGAGETLL
QKAIQQGQGQAGAGRGQLLDAVSEIQERHGAVREMERSLRELHQVFLDMAALVEAQGHQL
NDIESHVARASSFVLRGAVELETAREYQKGSRKWACVAVVAGAVLVAVIVLPIVINLHLL
TVR
NT seq 912 nt   +upstreamnt  +downstreamnt
atgaacgacctcttctcgtcggggtcgttcaagaagtacgcggacctgaagcagcaggtg
gtgctggacgacctggaggccagcggcggcggcggcgaggccgagggcccggacctcgac
cggttcttcgaggacgtggaggccgtgaaggaggacctgcgcgggctggaggcgctgcac
cggcgccagcgggcggcgcacgaggagggcaagaccgcgcacgacgccggcgccgtgaag
gccctccgcgcccgcacggacgccgacgtcggccaggtgctcgaccgcgccaacgccgcc
agccgcaggctccccggctgcgggcccgggtcctccaccgaccgcacccgcacctccgtc
gtcaccggcctcggcaagaagctcaaggacctcatggacgacttccagggcctgcgggcg
cgcatggcggcggagtacaaggagacggtggcgcggcggtactacacggtgaccggcgag
acggcggaggacggcacggtggaggcgctcatctcgtcgggcgccggcgagacgctcctg
cagaaggcgatccagcaggggcaggggcaggccggcgccgggcgcgggcagctgctggac
gcggtgtcggagatccaggagcggcacggcgcggtgcgggagatggagcgcagcctgcgg
gagctgcaccaggtgttcctggacatggcggcgctggtggaggcgcagggccaccagctg
aacgacatcgagagccacgtcgcgcgcgccagctccttcgtgctccgcggcgccgtcgag
ctcgagaccgcgcgggagtaccagaagggcagccgcaagtgggcgtgcgtcgccgtcgtg
gccggcgccgtgctcgtcgccgtcatcgtgctgcccatcgtcatcaacctccacctcctg
accgtcagatag

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