Panicum virgatum (switchgrass): 120653937
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Entry
120653937 CDS
T07260
Name
(RefSeq) syntaxin-124-like
KO
K08486
syntaxin 1B/2/3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
120653937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120653937
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120653937
Membrane trafficking [BR:
pvir04131
]
SNARE
Syntaxin (Qa)
Stx-PM
120653937
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of epithelial cells
120653937
Exosomal proteins of other body fluids (saliva and urine)
120653937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syntaxin
SNARE
PigL_N
Motif
Other DBs
NCBI-GeneID:
120653937
NCBI-ProteinID:
XP_039787532
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Position
1N:complement(9559308..9560219)
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AA seq
303 aa
AA seq
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MNDLFSSGSFKKYADLKQQVVLDDLEASGGGGEAEGPDLDRFFEDVEAVKEDLRGLEALH
RRQRAAHEEGKTAHDAGAVKALRARTDADVGQVLDRANAASRRLPGCGPGSSTDRTRTSV
VTGLGKKLKDLMDDFQGLRARMAAEYKETVARRYYTVTGETAEDGTVEALISSGAGETLL
QKAIQQGQGQAGAGRGQLLDAVSEIQERHGAVREMERSLRELHQVFLDMAALVEAQGHQL
NDIESHVARASSFVLRGAVELETAREYQKGSRKWACVAVVAGAVLVAVIVLPIVINLHLL
TVR
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctcttctcgtcggggtcgttcaagaagtacgcggacctgaagcagcaggtg
gtgctggacgacctggaggccagcggcggcggcggcgaggccgagggcccggacctcgac
cggttcttcgaggacgtggaggccgtgaaggaggacctgcgcgggctggaggcgctgcac
cggcgccagcgggcggcgcacgaggagggcaagaccgcgcacgacgccggcgccgtgaag
gccctccgcgcccgcacggacgccgacgtcggccaggtgctcgaccgcgccaacgccgcc
agccgcaggctccccggctgcgggcccgggtcctccaccgaccgcacccgcacctccgtc
gtcaccggcctcggcaagaagctcaaggacctcatggacgacttccagggcctgcgggcg
cgcatggcggcggagtacaaggagacggtggcgcggcggtactacacggtgaccggcgag
acggcggaggacggcacggtggaggcgctcatctcgtcgggcgccggcgagacgctcctg
cagaaggcgatccagcaggggcaggggcaggccggcgccgggcgcgggcagctgctggac
gcggtgtcggagatccaggagcggcacggcgcggtgcgggagatggagcgcagcctgcgg
gagctgcaccaggtgttcctggacatggcggcgctggtggaggcgcagggccaccagctg
aacgacatcgagagccacgtcgcgcgcgccagctccttcgtgctccgcggcgccgtcgag
ctcgagaccgcgcgggagtaccagaagggcagccgcaagtgggcgtgcgtcgccgtcgtg
gccggcgccgtgctcgtcgccgtcatcgtgctgcccatcgtcatcaacctccacctcctg
accgtcagatag
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