Panicum virgatum (switchgrass): 120654275
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Entry
120654275 CDS
T07260
Name
(RefSeq) uncharacterized ATP-dependent helicase YprA-like
KO
K06877
DEAD/DEAH box helicase domain-containing protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09190 Not Included in Pathway or Brite
09194 Poorly characterized
99996 General function prediction only
120654275
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Gene cluster
GFIT
Motif
Pfam:
DEAD
MZB
WHD_HRQ1
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120654275
NCBI-ProteinID:
XP_039787721
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Position
1N:986194..988980
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AA seq
928 aa
AA seq
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MAGREQRAVVLLPVRALDGRTTTVRLPAAASVRDLKAALRASFPPAQAASAFHLFLRGGK
LLLDAKLAGLSLALGEFVSLIPFAARPAPPPVFASDKKRKFFASSWHGEDVYAKIAGVAS
SNPASSSFYCHGEQPLGPAPMVDHLKQGLGKHGQVRHVQEIPGREASFSPLPPHLSQPTR
DALNAIGVTRLYSHQAEAIEAAVSGKHVVVSTSTSSGKSLCYNVPVLESVSSPSSTSCAL
YIFPTKALAQDQLKTLLEMTKGQQCDLDVSIYDGDTPMKDRAKVRDGARLLITNPDMLHM
SILPCHAQFRRILSNLEYVVIDEAHSYKGAFGCHTALILRRLKRICADVYGSHPKFIFCT
ATLANPREHVMELAKLDDVELVQNDGSPCGSKYFLLWNPAVARAQERRPSPIQEVSYLLA
EMVQHGLRCIAFCKTKKLCEMVLARTREILEETSVELADSICVYRGGYVAEDRRKIEADL
FGGKLRGVAATNALELGIDVGHIDATLHLGFPGSIASFWQQAGRSGRRSKQSIAVYVGFE
GALDQYFMNFPQKLFGKPVERCQVDSQNQKVLGQHLACAAFEKPLHPEHDERYFGSGMNS
AMVTLKDKGCLMNNQAEDSGVWKYVGSDKSPSRTVSIRAIEHDRYKVIDKQGYRVLEEIE
ESKAFFQVYEGAVYMHQGCSYLIERLDHSSRTAYCRVADLKYYTKIRDHTEISVLEGDIA
LLPTSASSKTDMIRTTAQANDCKVTTKWVCFDRIWKSNNLFSDSIKLDLPPYSFDTQAAW
VSVPKSTRAAIEQRKLGFQGGVHAASHALLSIVPLHMMCSTSDLGTQCADPQQTSETPDR
ILIYDKHPGGIGLASQVKLLFGELLVAALQLISACGCTNLDGCPNCIQSFACGAYNKNLD
KAAAVLILKGVIENETLPVYGKDGSQQN
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcggggagagagcagcgcgcggtggtgctcctcccggtgcgcgcgctcgacggccgc
accacgaccgtccgcctccccgccgcggcctccgtgcgggacctcaaggcggcgctgcgg
gcctccttcccgcccgcgcaggccgcctcggccttccacctcttcctccgcggcggaaag
ctcctcctcgacgccaagctcgccggcctgtccctcgccctgggggagttcgtctccctc
atcccctttgccgccaggcccgcgccgccgcccgtgttcgcctcggacaaaaagaggaag
ttctttgcgtcctcttggcacggagaggatgtctatgccaagatcgccggggtggccagc
agcaaccctgcctcatcgtccttctactgccacggcgagcagccgctgggccctgcgccg
atggtggaccacctcaagcaagggctcgggaagcacggccaggtcaggcatgtccaggag
atccccggcagggaggcgtccttctccccgctccctcctcatctctcgcagcccacgagg
gacgcgctcaacgccatcggagtcacgaggctgtacagccaccaggctgaggccatcgag
gccgccgtctccggcaagcacgtcgtcgtctcgacctccacgtccagcggcaagtccctg
tgctacaacgtccccgtgctcgagtccgtctcgagcccgagttcgacgtcgtgcgcgctc
tacatcttcccgaccaaggcgctcgcgcaggaccagctcaagactctgctcgagatgacc
aaggggcagcagtgcgatttggatgtcagcatctacgacggcgacactccgatgaaagac
cgtgcaaaggtcagggacggcgcgcggctgctcatcaccaacccggacatgctgcacatg
tccatcctgccgtgccacgcgcagttcaggagaattctgtccaatctcgagtacgttgtc
atcgacgaggcgcattcgtacaagggcgccttcggctgccacaccgcgctgatcctgagg
aggctgaagcgcatctgcgcagatgtctatggcagccatcccaagttcatattctgcacc
gcgacattggcgaacccccgggagcacgtcatggagctggccaagctcgacgacgtcgag
ctcgtccagaacgatgggagtccttgcggctccaagtacttcctcctgtggaacccggcg
gtggccagggcgcaggagaggcgcccgagcccgatacaggaggtctcctacctgctcgcc
gagatggtccagcacgggctccgctgcatcgcgttctgcaagacgaagaagctctgcgag
atggtgctcgcgcgtacgcgcgagatcctcgaggagacgtcggtggagctcgcggattcc
atctgcgtgtaccgtggtggctatgtcgcagaggatcggaggaagatcgaggctgacctc
tttgggggaaaacttcgcggcgtggcggcgacgaatgctcttgagcttgggatcgatgtc
ggccacatcgatgcgacattgcatctcgggttccccggaagcattgccagcttctggcag
caggcagggcgatctggacggagatcgaagcaatcaattgctgtttatgttggctttgag
ggtgctctggatcagtacttcatgaacttcccacagaagctctttggtaagccggttgag
cgttgccaggtcgattcccagaatcagaaggtcctggggcagcatcttgcctgtgctgct
ttcgaaaagccgttacatccggagcacgatgagagatactttggttctggtatgaacagt
gcgatggtgacactgaaagacaaaggatgtctgatgaacaatcaggctgaagattcaggc
gtgtggaaatatgttggatctgacaagagcccttcgcgtacggtgagcatacgagcaata
gaacatgatcggtacaaggtgattgacaagcaaggttatcgagtgctagaggagatcgag
gaaagcaaggctttctttcaggtgtatgaaggtgctgtttacatgcatcaaggctgcagc
tatttaattgagaggcttgatcactcctcaaggacagcttactgtagagtagctgatctc
aagtactacactaaaattcgagaccacaccgagatcagtgtccttgaaggtgatattgct
ttgcttcctacaagcgcgtcatctaaaactgacatgatcaggacaactgctcaagcaaac
gattgcaaggtgacgaccaaatgggtctgctttgaccggatttggaaatcgaacaacctg
ttctctgacagcattaagcttgacttgcctccatactccttcgacactcaagctgcttgg
gttagtgttcccaaatcgacaagggcagccatcgagcaaaggaaattgggatttcaaggt
ggtgttcatgctgcgtcgcatgctcttctaagtatagtacctttgcatatgatgtgcagt
acttctgatctcgggacacagtgtgcagaccctcaacaaacatctgaaactcctgacaga
attctgatctatgataaacaccccggtggcatcggcttggcatcacaggtcaagctgctc
tttggggagctgctggttgccgctttacaacttatttcagcatgcggctgtaccaacttg
gatggttgcccaaattgcatccagtcatttgcatgtggcgcatataacaagaatctggat
aaggcggcggcagttttgattctcaaaggagtaattgaaaacgaaacgttgcctgtttat
ggcaaagatggttctcagcagaactga
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