Panicum virgatum (switchgrass): 120654342
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Entry
120654342 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120654342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120654342
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
120654342
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
HECT type E3
120654342
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
HEAT_EZ
HEAT_2
UNC45-central
Motif
Other DBs
NCBI-GeneID:
120654342
NCBI-ProteinID:
XP_039787781
LinkDB
All DBs
Position
1N:complement(212280..221307)
Genome browser
AA seq
1842 aa
AA seq
DB search
METRSSSRKRAAAAAASSSSSASKRFRPNTRRNSSAAGPAPAPAPAPAPSMEPSPSSRRR
SRAAAAAADKGKDPDPASSDPSPPAPDDDSDAPFPQSFSSASTALQGLLRRLGAGLDDLL
PSSSSSAPSSATSAHLKRILAGLQAHGDESRQLQSLMQLCEMLSIGTEDSLAAFPVDAFV
PILVGMLGREDEPATAGASPDVMLLAARALANLVDVLPSSCSAVVHYGAIQCFCARLLTI
EYMDLAEQSLQALKKISLEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANICRKLP
SDASEFVMEAVPLLTNLLNHHDSKVLEHASVCLTRIAEAFTHHPEKLDELCNHGLVAQAA
SLISVGNSSGQASLSTSTYTGLIRLLSVCASGSLLAVKTLLLLGISGTLKDILSGSGLIS
GTSVSPALTRPADQMFEIVSLADDLLPHMPARVINLPTYYHSYKSSSAKKSASIKQDGAG
STENERSGRERLLREHPELLQQFGMDLLPTVTQVYGSSVNAPIRHKCLSIIGKLMYYSSA
ETIQSLLGTTNISSFLAGILAWKDPQVLIPALQIAEIMMEKLPETFSKLFVREGVVHAVE
SLICSESSNTLPSQVPPQDKDNDSAMPSRSRRQRRRGGAVPAENSSLDESNSSNLGVACS
TTSTSEVPNTSLRFAVSDHAKSFKDRYFPTDSNSNDIGVTDDLLKLRALCSKFNTAIENA
KTKAKGKSKAISADCFDISIDVEEQLDEVISEMLAELSKVNGVSTFEFIRSGVVTVLLDY
LSCGTFGKEKVSEGNLPQLRQQVLRRYKSFICVALSIDHERDGTPMALLVQKLQSALSSL
ERFPVVLSQSSRIGIGGSRLTSGLSALAQPFKLRLSRAQGEKSLRDYSSNIVLIDPFASL
AAVEEFLWPRVQRSEVASKPTVPSVNNSESGVPGTTAGASLTAATAHSGLRPTTRSKSSA
ASSGTSKKDAPNESTSTAKGKGKAIVKPNSDESKGPNTRNAARQKSVSEKDSEMKRAHGH
SSSEDEELDTSPVEIDDALMIDDDDISEDDDDDHEVLQEGSLPICSQDGVHDVKLGDADE
SNIGSASFSQTQLSSGSIARNTSNRGPDSSEFRSASTFGSRGAMSFVAATMAGLASVGGR
SVRGSRDRRGLSLGGSINDNNKLIFTAGGKQLSKHLTVYQAIQRQLMLDEDDEERFNGSD
LSNDGNRFWGDVFTITYQKADNQAEKGSQGGSTSLNSKSDSLRSISEAQGVSLLDSILQG
KLPCDLERTNSTYNILALLRVLEGLNQLSPRLRAQGASDDFAEGKIKTLDELYRTGAKVS
SEEFVNSKLTPKLARQMQDVLALCSGSLPSWCYQMTKACPFLFPFETRRQYFYSTAFGLS
RALNRLQQQQSDNHSSGGEREVRFGRLQRQKVRVSRNRILDSAAKVMEMFSSQRAVLEVE
YFGEVGTGLGPTLEFYTLLSHELQSAKLGLWRSTTPYDSGLQIDMNDVINLDPEDSLSGK
KLSSDLPDDGRHLIQAPLGLFPRPWPPKADASEGSRFFKVLEYFRLIGQVTAKVLQDGRL
LDLPLSTAFYKLILGQELDLFDIVSFDSEFGKTLQELRVLVERKKFLESTPGENQLEVAD
LRFRGAAIEDLCLDFTLPGYPDYVLKEGEGSAIVNIYNLEEYVTLLVDATVKSGIKRQVE
AFRSGFNQVFDISSLQIFSPQELDYLICGRQEIWEPESLVDNIKFDHGYTAKSPAIVNLL
DIMAEFTPDQQHAFCQFVTGAPRLPPGGLAALSPKLTIVRKHPSSAVNTSNSTGATESAD
DDLPSVMTCANYLKLPPYSTKEIMRKKLLYAILEGRGSFDLS
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atggaaacacgcagcagcagccgcaagcgcgcagccgccgccgccgcctcctcctcctcc
tcagcctccaagcgcttccgccccaacacccgccgcaactcctccgccgccggccccgcc
cccgccccggccccggcccctgccccctcgatggaaccctccccgtcctcccgccgccgc
tcccgcgctgccgccgccgccgccgacaagggcaaggaccccgaccccgcctcctccgac
ccctctccccccgcccccgacgatgactccgacgcccccttcccccagtccttctcctcc
gccagcaccgctctccagggcctcctccgcaggctcggcgccggtctcgacgacctcctc
ccctcctcctcctcctccgccccctcctcggccacctctgcgcacctcaagaggatcctc
gccggcctgcaggcccacggcgacgagtcgcgccagctccagtccctcatgcagctctgc
gagatgctctccatcggcaccgaggactcgcttgccgccttccccgtcgacgccttcgtc
cccatcctcgtcgggatgctcggccgcgaggacgagcctgccaccgccggcgccagcccc
gacgtcatgctgctcgctgcccgggccctcgccaacctcgtcgacgtgctcccgtcctcc
tgctccgccgtcgtgcactatggggccatacagtgtttctgtgctcgactgctaaccatt
gaatacatggacctcgctgagcagtctctacaagctcttaagaagatctctctcgagcac
ccaaccgcgtgtttgcgtgctggggcgctaatggccgtcctatcatatctcgacttcttc
tccactggggttcagagagtggcattgtcaaccgccgcaaatatctgcaggaagctgcca
tctgatgcttccgagtttgtcatggaagctgtccctttgctcacgaatctcctgaaccac
catgattccaaggtactagagcatgcttctgtttgtttgacacgcattgccgaagctttt
acccaccacccagagaaacttgatgagctctgcaatcatggattggttgctcaagctgct
agcttgatatctgttggcaactcctctggccaggcatcactaagtacttccacatataca
ggtttaatccgtcttctctcagtatgtgcaagtggatcactgctggcagttaaaacacta
cttctgctggggatcagtggcactcttaaagatatcctttctggatctggtttgatttct
ggaacttcagtctcccctgctctaacaaggcctgccgatcagatgtttgagatagtgagc
cttgctgatgatttgcttccacacatgcctgcgagagtcattaatttaccaacatactac
cattcttataaaagctcttcagcaaagaaatctgcttcgatcaaacaagatggggctggt
tcaacagaaaatgaaagatctggccgtgagaggctattgcgtgagcatcctgaacttcta
cagcagtttggtatggatttgttacccacggtgacacaggtgtatggttctagtgtaaat
gcaccgatacgtcacaagtgcttatccattattgggaagttaatgtactacagctctgct
gaaacaatacaatccctccttggcacaacaaacatatccagcttcctcgcaggaatactt
gcatggaaagatcctcaagtgttgattcctgctcttcagatagcagaaataatgatggaa
aagcttccagagacattttctaagttgtttgtaagggaaggtgttgttcacgctgtggag
tcacttatatgttcagaatcctccaatacactgccttctcaggtaccaccacaggataaa
gataatgattctgccatgccgtcacgttctaggcgtcaacgtaggcgtgggggtgctgtg
ccagcagaaaacagttcattagatgaatcaaacagttccaatcttggggttgcctgctca
acaacaagcacttcagaagttccaaacaccagcttgcgttttgcagttagcgatcatgca
aagtctttcaaagatagatacttcccgacggacagtaattcaaatgatattggagttact
gacgaccttcttaaactgagagcactctgctcaaagttcaatactgcaattgagaatgcc
aaaacaaaagccaaagggaaatcaaaagctataagcgctgattgttttgacatctcaatt
gatgtagaagaacaattagacgaagtgatatctgagatgctcgctgagcttagcaaagtt
aatggtgtttccacatttgagttcattagaagtggagttgtgacagtgttgcttgactat
ctgtcctgtgggacatttgggaaggaaaaagtatctgaaggaaacttaccacagcttcgt
cagcaggtccttaggcgatacaagtccttcatatgtgttgccctttctattgaccatgaa
agggatggaactcccatggcactgttggttcaaaaactacaaagtgcattgtcttcattg
gaacgtttccccgttgtcctcagccagtctagtaggattggtattggtggttcccgtctg
acctcaggtcttagtgctctggctcagcccttcaagttgcgtctgtcccgagctcaaggt
gaaaaatcacttcgggattattcatcaaatattgtgcttatcgacccatttgccagtcta
gcagctgttgaagaattcctttggcccagggttcaacgcagtgaggttgcttcgaaacct
acagttccatctgtaaataattctgaatcaggtgttcctggcaccacagctggtgcatca
ttaacagctgcaacagctcattccggtcttcgtccaacgacaagatcaaaatcgtctgct
gcaagtagtggtacatcgaaaaaggacgctcccaatgaaagcactagtactgccaaagga
aaaggcaaagctattgtaaaaccaaactcagatgaatcaaaaggacctaatacgaggaat
gctgcccgccaaaagtctgtttcagagaaggattcagaaatgaagcgagcgcatggtcac
agtagctctgaggatgaagagcttgatacatctcccgttgagattgatgatgctttaatg
atcgatgatgatgacatttcagaggatgacgatgatgatcatgaggttctccaagaaggg
tctcttcccatctgttctcaagatggtgtgcatgatgtgaaattgggtgatgctgatgag
tctaacatcggctcagccagttttagccagacgcagctgtcatctggttccattgctaga
aacacatctaacaggggaccagattcttctgaattccgaagtgcaagcacatttggttca
cgaggtgcaatgtcatttgttgctgcaacaatggctgggctagcttctgttggtggtcgc
agtgttagaggttcccgagatcggcgtggtctgtcacttggaggtagcattaatgataac
aataaactcatattcactgctggtgggaagcagctcagcaaacatttgacggtgtaccaa
gctatccaacgtcaactgatgcttgatgaggatgatgaagaaaggttcaatggatctgat
ttatcaaacgatggaaaccgcttctggggtgatgtgttcacaataacataccagaaggct
gataaccaagccgagaagggatcccaagggggttccacctcattgaactcaaaatcagat
tctttaaggtctatctctgaagcacagggagtttctcttcttgatagcatcttacaagga
aaacttccttgtgatcttgagagaacaaactcaacatacaacattttagcactattacgt
gtactggaggggcttaatcagttatcccctcgcttaagagcacaaggtgcatctgatgat
tttgctgaggggaaaatcaaaaccctggatgagctatatagaactggagccaaggtatcc
tctgaggagtttgtcaatagtaagttgacgccaaagcttgctcggcaaatgcaggatgtt
cttgcactctgtagtggcagtttaccttcttggtgttatcaaatgaccaaggcctgccca
tttctgttcccttttgagacaaggaggcaatacttctactccacagcctttgggctgtca
cgagcattgaatcgacttcagcaacagcagagtgacaatcacagctctggtggtgaaaga
gaggttcggtttggcaggttacaacgccagaaagttcgtgtttcccgtaatcgtattctg
gattctgctgctaaagttatggagatgttctccagtcagagggctgttcttgaggtggaa
tactttggtgaagttggaactgggctggggcctactttggagttttatactctcttaagt
catgagctacaaagtgctaagctggggctatggagatctactactccatatgattcagga
ttgcaaattgatatgaatgatgtgattaatttagaccctgaagatagcttgtcaggaaaa
aaactcagctcagatttaccagatgatggcagacatttgatacaagctcctctcggattg
tttcctcggccttggccacctaaagccgatgcttcagaaggtagcagattcttcaaagtt
ttggagtatttccggttaattggtcaagtaacagcaaaagtcttgcaagatggcagactt
ttagatttgcctttatcaacagcattttataagcttatacttggacaggagcttgatttg
tttgacatagtctcatttgattctgaatttgggaagacattgcaagaactgcgagttctt
gttgaacgaaagaagttccttgagtccactcctggcgagaatcagctagaagttgcagac
ttgcgattccgtggtgctgctattgaagatttgtgtttagattttactcttccgggttat
cctgattatgttctgaaagagggtgaaggaagcgcaattgttaacatttacaacttagaa
gagtatgttactttgctagtggatgctacagttaagtcggggataaagcgacaggttgag
gcatttagatcagggtttaatcaggtgtttgacatctcatccctccaaatattttcacct
caagaacttgactatctaatatgtggccgacaagaaatttgggagccggaatccctggtg
gataacataaaatttgatcatgggtatactgctaaaagtcctgcgattgtgaatctactc
gatataatggcggaattcacccctgatcagcagcatgcgttctgccagtttgtaactggt
gctcctcgccttccacccggtggtttggcagcccttagccccaagcttactattgttagg
aagcacccttcaagtgcggtaaatacttcaaattcaactggggcgacagagtccgcagat
gatgatttgcctagtgtgatgacgtgtgctaattatctgaagttgcccccctactccaca
aaagaaatcatgcgcaagaagttgctttatgcaatcctggaagggcgaggatcatttgat
ctttcataa
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integrated database retrieval system
