Panicum virgatum (switchgrass): 120654355
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Entry
120654355 CDS
T07260
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120654355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120654355
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120654355
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120654355
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120654355
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
120654355
Messenger RNA biogenesis [BR:
pvir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
120654355
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP60 / Chaperonin
120654355
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
120654355
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120654355
Exosomal proteins of other body fluids (saliva and urine)
120654355
Exosomal proteins of breast cancer cells
120654355
Exosomal proteins of colorectal cancer cells
120654355
Exosomal proteins of bladder cancer cells
120654355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
YIEGIA_cap
Motif
Other DBs
NCBI-GeneID:
120654355
NCBI-ProteinID:
XP_039787806
LinkDB
All DBs
Position
1N:401128..405862
Genome browser
AA seq
598 aa
AA seq
DB search
MASPFGTCRLNKPAPAAFATNKTLLLSPPVVSLPRQMKMRPQRKCRFTVNAAKELHFNKD
GSAIRKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENI
GAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGVKIVAAGANPVQITRGIEKTAKALVN
ELQKMSKEVEDSELADVAAVSAGNNYEIGNIIAEAMSKVGRQGVVTLEEGKSAENNLYVV
EGMQFDRGYISPYFVTDSEKMIVEYENCKLLLVDKKINNARDLITILEDAIRGGYPILIV
AEDIEQEALATLVVNRLRGALKIAAIKAPGFGERKSQYLDDIATLTGGTVIRDEVGLSLE
KADNEVLGTAAKIVVTKDSTTIVGDGTTQEEVNKRVMQIKNQIEATDQEYEREKLNERIA
KLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIV
ETLENDEQRVGAEIVRKSLSYPLKLIAKNAGVNGSVVIEKVLANENLRYGYNAATGNYED
LMAAGIIDPTKVVRCCLEHAASVAKTFITSDAVVVDIKVPEQAPAANPMGGGGSGFGF
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaccgttcgggacatgtcgcctcaacaagccagcacctgctgcctttgcgacc
aacaagaccctcctcctttcgcccccggttgtttccctcccacggcaaatgaaaatgagg
ccccagaggaagtgccgtttcacagtaaatgcagcaaaggagctccatttcaacaaggat
ggctcggctatcaggaaacttcagaatggggtcaataagcttgcagatctcgttggggtt
actcttggaccaaaaggacgaaatgtagtccttgagagcaagtatggctcacccaaaatc
gtcaatgatggagtcactgtcgcaaaggaggttgagctggaggaccctgttgaaaacatt
ggagctaaattggtccgccaagctgctgctaaaacaaatgatttggctggtgatgggaca
accacttcggtcgtccttgctcaagggatgattactgagggtgtaaagattgtagctgct
ggtgctaatccagtgcagatcactcggggtattgagaaaacagccaaagcactagtcaat
gaactccaaaagatgtccaaggaggttgaggatagtgagctggctgatgttgctgcagta
agcgctggaaataactatgaaattgggaatattatagctgaggctatgagcaaggttgga
cggcagggagtggtcacccttgaagaaggaaagagtgctgaaaataacctctatgttgtt
gagggaatgcagttcgatcgtggttatatttctccctactttgtgactgacagtgaaaaa
atgatagtggagtatgagaactgcaagctgctcctagtagacaagaaaattaacaatgca
agagatcttatcactattctggaggatgctattagaggtgggtatccaattctaatagtt
gcagaggatattgagcaggaagctcttgcaacccttgtggttaataggcttagaggtgca
ttgaaaattgctgcgatcaaggcccctggctttggagagcgcaagagtcaatacctggat
gacattgctactctcactggaggcactgtcatcagagatgaagttgggttgtccctagag
aaggcagacaatgaggtcctaggaacggccgccaagattgtagttactaaggattcaacg
acaatagttggagatggtactacacaggaggaagtaaacaaaagggtgatgcaaatcaag
aaccagattgaggcgactgatcaagaatacgagagagaaaagcttaacgagaggattgct
aagctgtctggtggtgttgctgttattcaggtgggagcacagacagaaactgagcttaag
gaaaagaaactgagggttgaagatgcccttaatgctacaaaggcagcagttgaggaaggc
attgttgtaggtggtggctgtacccttttaaggcttgcatcaaaagttgatgccattgta
gaaacccttgagaatgatgaacagagggtcggggctgaaattgtaaggaagtccttgagc
tatccacttaaattgattgcgaagaatgcgggtgttaatggcagcgtggttatcgagaag
gttcttgccaatgagaacttaaggtatggttacaatgcagctacagggaactatgaggat
ttgatggctgctggtattattgatcccaccaaggttgtgaggtgttgcttggagcatgct
gcctcggtggcaaaaactttcatcacttctgatgctgttgtggttgacatcaaggtgccc
gagcaagcacctgctgcaaacccaatgggtggtggtggctcaggttttggattctag
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