KEGG   Panicum virgatum (switchgrass): 120654433
Entry
120654433         CDS       T07260                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4-like
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03020  RNA polymerase
pvir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120654433
  09124 Replication and repair
   03420 Nucleotide excision repair
    120654433
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvir03021]
    120654433
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120654433
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     120654433
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      120654433
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 120654433
NCBI-ProteinID: XP_039787899
LinkDB
Position
1N:complement(1249357..1250388)
AA seq 143 aa
MSGEEEENAAELKIGEEFLKAKCLMNCEVAIILEHKFEQIQQHASDSDPSSQVSQVFEKS
LQYVKRFSRYKNPDAVRQVRETLSRYGLAEFELCTIGNLCPDTSGEATALVPSLKSGGRF
VGDQGDEKIEKMLNDLSLIKKFE
NT seq 432 nt   +upstreamnt  +downstreamnt
atgtccggcgaggaggaggagaacgccgccgagctcaagatcggagaagagttcctcaag
gccaagtgcctgatgaactgcgaggtggccatcatcctggagcacaagttcgagcagatc
cagcagcacgcgtcggactcggacccctcgtcgcaggtgtcgcaggtgttcgagaagtcg
ctgcagtacgtgaagcgcttcagccgctacaagaaccccgacgccgtgcgccaggtccgc
gagacgctcagccgctacggcctcgccgagttcgagctctgcaccatcggcaacctctgc
cccgacaccagcggcgaggccaccgcgctcgtcccttccctcaagtccgggggcaggttc
gtcggcgaccaaggcgacgagaagatcgagaagatgctcaacgacctctccctcatcaag
aagttcgagtag

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